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Selected RNA databases

• The RCSB Protein Data Bank (PDB)
  
  
• The Nucleic Acid Database (NDB)
  
  
• A database of RNA base-pair structures (BPS)
  
  
• A database of RNA junction and kissing loop structures (RNAJunction)
  
  
• Thermodynamic data for nucleic acids (NTDB)
  
  
• A Database of Metal Ion Binding Sites in RNA (MERNA)
  
  
• The RNA Modification Database (RNAmods)
  
  
• Database of RNA Modifications (Modomics)
  
  

RNA structure analysis & visualization

• Mfold (prediction of RNA secondary structure)
  
  
• Bielefeld University Bioinformatics Server (BiBiServ)
  
  
• RNAView Secondary Structure Viewer
  
  
• PseudoViewer
  
  
• Vienna RNA Package
  
  
• Alignment of RNA Tertiary Structures (ARTS)
  
  
• 3DNA - Analysis, rebuilding, and visualization of 3D RNA & DNA structures
  
  
• Jmol (an open-source Java viewer for chemical structures in 3D)
  
  
• PyMOL (molecular visualization system)
  
  
• Structural classification of RNA: RNA motifs by structure, function and tertiary interactions (SCOR)
  
  
• Jena Library of biological macromolecules
  
  
• The RNA World Website
  
  
• FASTR3D
  
  


• RNA FRABASE ver. 1.0