You are 4274976 visitor.
Currently 7 users online.


Sequence & secondary structure in dot-bracket notation
       
 PDB id   NDB id  Strands     Number of models     Functional class     Experimental method     Resolution [Å]     PDB deposition
2GYB A, U, V, W1RIBOSOMEElectron Microscopy152006-05-09

model 1
>strand_A
uGAAGAGUUUGAUCAUGGCUCAGAUUGAACGCUGGCGGCAGGCCUAACACAUGCAAGUCGAACGGUCCGGAAGAAGCUUUCUUUUGGACAGUGGCGGACGGGUGAGUAAUGUCUGGGAAACUGCCUGAUGGAGGGGGAUAACUACUGGAAACGGUAGCUAAUACCGCAUAACGUCGCAAGACCAAAGAGGUUUUCUUGCCAUCGGAUGUGCCCAGAUGGGAUUAGCUAGUAGGUGGGGUAACGGCUCACCUAGGCGACGAUCCCUAGCUGGUCUGAGAGGAUGACCAGCCACACUGGAACUGAGACACGGUCCAGACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGCACAAUGGGCGCAAGCCUGAUGCAGCCAUGCCGCGUGUAUGAAGAAGGCCUUCGGGUUGUAAAGUACUUUCGCGGGGAGGAAGGGAGCGACGAGCUCAUUGACGUUACCCGCGAAGUAGCACCGGCUAACUCCGUGCCAGCAGCCGCGGUAAUACGGAGGGUGCAAGCGUUAAUCGGAAUUACUGGGCGUAAAGCGCACGCAGGCGGUUUGUUAAGUCAGAUGUGAAAUCCCCGGGCUCAACCUGGGAACUGCAUCUGAUACUGGCAAGCUUGAGUCUCGUAGAGGGGGGUAGAAUUCCAGGUGUAGCGGUGAAAUGCGUAGAGAUCUGGAGGAAUACCGGUGGCGAAGGCGGCCCCCUGGACGAAGACUGACGCUCAGGUGCGAAAGCGUGGGGAGCAAACAGGAUUAGAUACCCUGGUAGUCCACGCCGUAAACGAUGUCGACUUGGAGGUUGUGUCUCGUGGCUUCCGGAGCUAACGCGUUAAGUCGACCGCCUGGGGAGUACGGCCGCAAGGUUAAAACUCAAAUGAAUUGACGGGGGCCCGCACAAGCGGUGGAGCAUGUGGUUUAAUUCGAUGCAACGCGAAGAACCUUACCUGGUCUUGACAUCCACGGAAGUUUUCAGAGAUGAGAAUGUGCCUUCGGGAACCGUGAGACAGGUGCUGCAUGGCUGUCGUCAGCUCGUGUUGUGAAAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCUUAUCCUUUGUUGCCAGCGGUCCGGCCGGGAACUCAAAGGAGACUGCCAGUGAUAACUGGAGGAAGGUGGGGAUGACGUCAAGUCAUCAUGGCCCUUACGACCAGGGCUACACACGUGCUACAAUGGCGACUACAAAGAGAAGCGACCUCGCGAGAGCAAGCGGACCUCAUAAAGUGCGUCGUAGUCCGGAUUGGAGUCUGCAACUCGACUCCAUGAAGUCGGAAUCGCUAGUAAUCGUGGAUCAGAAUGCCACGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCACACCAUGGGAGUGGGUUGCAAAAGAAGUAGGUAGCAACCUUCGGGGCGCUUACCACUUUGUGAUUCAUGACUGGGGUGAAGUCGUAACAAGGUAACCGUAGGGGAACCUGCGGUUGGAUCA
....((((......[..))))...(.......(...(((.((.....(.(.(((..(((..((.((((((((.(.....).)))))))).)))))......(((......(((((((..((...(((.(((.(.((.....(((((......)))))......)).).....(((....)))....((((...)))).))).)))..)).)))))))(((....(.(..((((((((.......))))))))).)......)))..((.(((((....))))...).))))).((((..............)))).((((....))))...)))).).........(((....((((....))))..)))..))..))).....(........((((....)))).......).....(((((........((((.....))))..........)))))......((((([[.....((((......(..]])........)))).)))))..).....).............(([[.....(((....(((.((.((((.(((((((((.......((((((.....)))))).....)))))))..)))))).))...(((.(((....(((((.(....(((((((....((........)).......)))))))....................).)))))...)))..)))...)))....))).....(((((...((...((((.........))))...)))))))...........((((((..(((((((((.....)))))))))...((..]])).....)))))).))....(......((((....))))....).....].....(.((.(((((.(........((..(((((...(........(........)............((((((................(.((((....)))).).....(....).............((.......((((.........((((((((....)))..(((........)))..)))))......(((..((((((........(((.....))).......)))))).....(((((....))))).........)))..........))...))....))....)))))).....)....)))))...........(.....(((...(...(((....)))...).....))).....)............(....(((..((........))..)))....).....))........(((((((.........)))))))...........).)))))))..)........(..(.(.(..(((...(((((((((((....((((((.....((....))..))))))...)))))))))))...)))..).)..)..).........(((((((((....)))))))))......
>strand_U
gCGGAUUUAGCUCAGUUGGGAGAGCGCCAGACUGAAGAUCUGGAGGUCCUGUGUUCGAUCCACAGAAUUCGCACCA
(((((((..((((........)))).((((.........)))).....(((((.......))))))))))))....
>strand_V
gCGGAUUUAGCUCAGUUGGGAGAGCGCCAGACUGAAGAUCUGGAGGUCCUGUGUUCGAUCCACAGAAUUCGCACCA
(((((((..((((........)))).((((.........)))).....(((((.......))))))))))))....
>strand_W
gCGGAUUUAGCUCAGUUGGGAGAGCGCCAGACUGAAGAUCUGGAGGUCCUGUGUUCGAUCCACAGAAUUCGCACCA
(((((((..((((........)))).((((.........)))).....(((((.......))))))))))))....