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Structural elements
Secondary structures
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Institute of Computing Science
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Poznan University of Technology
Institute of Bioorganic Chemistry
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Polish Academy of Sciences
Sequence & secondary structure in dot-bracket notation
PDB id
NDB id
Strands
Number of models
Functional class
Experimental method
Resolution [Å]
PDB deposition
3BBO
A, B, C
1
RIBOSOME
Electron Microscopy
9.4
2007-11-09
model 1
>strand_A
uUCAAACGAGGAAAGGCUUACGGUGGAUACCUAGGCACCCAGAGACGAGGAAGGGCGUAUUAAUCGACGAAAUGCUUCGGGGAGUUGAAAAUAAGCAGAGAUCCGGAGAUUCCCGAAUAGGUCAACCUUUCGAACUUCUGCUGAAUCCAUGGGCAGGCAAGAGACAACCUGGCGAACUGAAACAUCUUAGUAGCCAGAGGAAAAGAAAGCAAAAGCGAUUCCCGUAGUAGCGGCGAGCGAAAUGGGAGCAGCCUAAACCGUGAAAACGGGGUUGUGGGAGAGCAAUACAAGCGUCGUGCUGCUAGGCGAAUCAGUGGAGUGCGGAACCCUAGAUGGUGAAAGUCCAGUAGCCGAAAGCAUCACUAGCUUAUGCUCUGACCCGAGUAGCAUGGGGCACGUGGAAUCCCGUGUGAAUCAGCAAGGACCACCUUGCAAGGCUAAAUACUCCUGGGUGACCGAUAGCGAAGUAGUACCGUGAGGGAAGGGUGAAAAGAACCCCCAUCGGGGAGUGAAAUAGAACAUGAAACCGUAAGCUCUCAAGCAGUGGGAGGGGGACCAGACCCUGACCGCGUGCCUGUUGAAGAAUGAGCCGGCGACUCAUAGGCAGUGGCUUGGUUAAGGGAACCCACCGGAGCCGUAGCGAAAGCGAGUCUUCAUAGGGCAAUUGUCACUGCUUAUGGACCCGAACCUGGGUGAUCUAUCCAUGACCAGGAUGAAGCUUGGGUGAAACUAAGUGGAGGUCCGAACCGACUGAUGUUGAAGAAUCAGCGGAUGAGUUGUGGUUAGGGGUGAAAUGCCACUCGAACCCAGAGCUAGCUGGUUCUCCCCGAAAUGCGUUGAGGCGCAGCAGUUGACUGGACAUCUAGGGGUAAAGCACUGUUUCGGUGCGGGCCGCGAGAGCGGUACCAAAUCGAGGCAAACUCUGAAUACUAGAUAUGACCUCCAAAUAACAGGGGUCAAGGUCGGCCAGUGAGACGAUGGGGGAUAAGCUUCAUCGUCGAGAGGGAAACAGCCCGGAUCACCAGCUAAGGCCCCUAAAUGACCGCUCAGUGAUAAAGGAGGUAGGGGUGCAGAGACAGCCAGGAGGUUUGCCUAGAAGCAGCCACCCUUGAAAGAGUGCGUAAUAGCUCACUGAUCGAGCGCUCUUGCGCCGAAGAUGAACGGGGCUAAGCGGUCUGCCGAAGCUGUGGGAUGUAAAAAAACAUCGGUAGGGGAGCGUUCCGUGUUAGGGAGAAACGCGUGCGUGAGCCGCGUUGGACGAAGCGGAAGCGAGAAUGUCGGCUUGAGUAACGCAAACAUUGGUGAGAAUCCAAUGCCCCGAAAACCUAAGGGUUCCUCCGCAAGGUUCGUCCACGGAGGGUGAGUCAGGGCCUAAGAUCAGGCCGAAAGGCGUAGUCGAUGGACAACAGGUGAAUAUUCCUGUACUACCCCUUGUUGGUCCCGAGGGACGGAGGAGGCUAGGUUAGCCGAAAGAUGGUUAUCGGUUCAAGGACGCAAGGUGACCCUGUUUUUCAGGGUAAGAAGGGGUAGAGAAAAUGCCUCGAGCCAAUGUUCGAGUACCAGGCGCUACGGCGCUGAAGUAACCGAUGCCAUACUCCCAGGAAAAGCUCGAAAGACCUUCAACAAAAGGGUACCUGUACCCGAAACCGACACAGGUAGGUAGGUAGAGAAUACCUAGGGGCGCGAGACAACUCUCUCUAAGGAACUCGGCAAAAUAGCCCCGUAACUUCGGGAGAAGGGGUGCCCCCUCACAAAGGGGGUCGAAGUGACCAGGCCCGGGCGACUGUUUACCAAAAACACAGGUCUCCGCAAAGUCGUAAGACCAUGUAUGGGGGCUGACGCCUGCCCAGUGCCGGAAGGUCAAGGAAGUUGGUGACCUGAUGACAGGGGAGCCGGCGACCGAAGCCCCGGUGAACGGCGGCCGUAACUAUAACGGUCCUAAGGUAGCGAAAUUCCUUGUCGGGUAAGUUCCGACCCGCACGAAAGGCGUAACGAUCUGGGCACUGUCUCGGAGAGAGGCUCGGUGAAAUAGACAUGUCUGUGAAGAUGCGGACUACCUGCACCUGGACAGAAAGACCCUAUGAAGCUUUACUGUUCCCUGGGAUUGGCUUUGGGCUUUUCCUGCGCAGCUUAGGUGGAAGGCGAAGAAGGCCCCCUUCCGGGGGGGCCCGAGCCAUCAGUGAGAUACCACUCUGGAAGAGCUAGAAUUCUAACCUUGUGUCAGGACCUACGGGCCAAGGGACAUUCUCAGGUAGACAGUUUCUAUGGGGCGUAGGCCUCCCAAAAGGUAACGGAGGCGUGCAAAGGUUUCCUCGGGCCGGACGGAGAUUGGCCCUCGAGUGCAAAGGCAGAAGGGAGCUUGACUGCAAGACCCACCCGUCGAGCAGGGACGAAAGUCGGCCUUAGUGAUCCGACGGUGCCGAGUGGAAGGGCCGUCGCUCAACGGAUAAAAGUUACUCUAGGGAUAACAGGCUGAUCUUCCCCAAGAGUUCACAUCGACGGGAAGGUUUGGCACCUCGAUGUCGGCUCUUCGCCACCUGGGGCUGUAGUAUGUUCCAAGGGUUGGGCUGUUCGCCCAUUAAAGCGGUACGUGAGCUGGGUUCAGAACGUCGUGAGACAGUUCGGUCCAUAUCCGGUGUGGGCGUUAGAGCAUUGAGAGGACCUUUCCCUAGUACGAGAGGACCGGGAAGGACGCACCUCUGGUGUACCAGUUAUCGUGCCCACGGUAAACGCUGGGUAGCCAAGUGCGGAGCGGAUAACUGCUGAAAGCAUCUAAGUAGUAAGCCCACCCCAAGAUGAGUGCUCUCCUA
(((((.........(((((((((...........(((.((...(..........(.(.......[..)........(((.....((]......))........))).....)......(((....)))(..)....((.(((.........))).))..........(((((......(...[..).......)))).).........(......)...(((((......(.]...).....)))))........------------------------.................((..(...(.(....(.(.......).)..........((.......))....).).....)..)).............------.....((((((((.........)))))))).......((((..{.{{))))............)....)).)).)................((....))...............(((......)))...................)))))))))........((((..(.((........)))..))))...................((((.......(.(((((.(((..(((...((.......))...)))...(......)..(.((.....)).)....))).))))).)....((.(.....((.........(((((((..((.(...((((((......))))))...)..))...((....((..........))...))....)))))))......((.....)).........))........).))..((((((....(((((....)))))...(((((......(((................(.(..(.........------..........)..).)................))).-------------------..(..).)))))......(((((................)))))....((........))...(((...(....((([[[.....(.((((...........((.....(..(((........(.(.(.(.....(...........).....).........(........)...).).)....)).).)....))..........]]].....)))).).)))....)..))).(.(........).).....))))))......((....(......(((((.((....)))))))....)...)).............)))).(......((.......((((.......))))...(.......(.....(....((.((...((.....)).)).)).......(((...(...(......((....))......)...)....(((((........)))))....((..(.((................(....(....(((((((((.....[[[..)))))(...(((.......(-----------------------..(((.........)))....)......)))....)(...((((....))))....))))).....).....)..........................)).)...))...)))..)......((......))...)..(..(.....)..)....)...((((....(((.((.(..................((((.....(....)......))))(((((.........)))))(...).......((((....(...((.........)).....(((((.....(.(....).).......)))))....(.(...(...((.((((..(((...((..((((.......(....)........))))..))...)))))))...)).).(.((...........)).)........(............(((.(.....).)))......).....).)...).....))))........).)).))).)))))).....).....(((((........)))))..(((((((...(...(.......(...(..((...((.(...(((((((......(..(((..((((...........((..............((...((.......))...))....................))..))))..)))..).......(.....(((..........)))....).....)))))))....).))..(........[..)((.((...........].)).)).[.....((((((....(((.((.......)).))).......]...[[.......))))))...(((.....(...<..).....)))..((....))....]]........(((.((..((..}}.}..)).)).)))......>.......))....)..).........((.....((.((.................)).))......)).........(((((.(.(......((..(((........)))....))....((.......))..........)...)...))).))....(....((....)).....)....)....)..)))))))....(((((.(...(.((....(((((.....(....)....)))))....((((...((((...((.((((((((]]].))))))...)).))...)))).)))).....((....(.(...............).)....))..)).).......).)))))....
>strand_B
uUCUGGUGUCCUAGGCGUAGAGGAACCACACCAAUCCAUCCCGAACUUGGUGGUUAAACUCUACUGCGGUGACGAUACUGUAGGGGAGGUCCUGCGGAAAAAUAGCUCGACGCCAGG
.(((((.(......(..(((.......((.(.................)...))......)))...)..........((.(.(........).).)).............).)))))
>strand_C
gAAGGUCACGGCGAGACGAGCCGUUUAUCAUUACGAUAGGUGUCAAGUGGAAGUGCAGUGAUGUAUGCAGCUGAGGCAUCCUAACAGACCCACAGACUUGAAC
...((...(.(.........).)..............(.((((...((......(((....))).....))....))))..)......)).......))))).
