RNA FRABASE - RNA FRAgments search engine & dataBASE

RNA FRAgments search engine & dataBASE

You are 15216. visitor.

Currently 2 user(s) on-line.

Supported by
Laboratory of Structural Chemistry of Nucleic Acids,
Institute of Bioorganic Chemistry,
Polish Academy of Sciences

RNA FRABASE: an engine with database to search the three-dimensional fragments within 3D RNA structures using as an input the sequence(s) and / or secondary structure(s) given in the dot-bracket notation.

Database contains (updated 2009-07-07):

RNA sequences and secondary structures, described in dot-bracket notation, derived from the 1345 PDB-deposited RNA structures and their complexes,
atom coordinates of the unmodified and modified nucleotide and nucleoside residues (561265 cases) copied out from the PDB-deposited RNA structures,
torsion angle values, sugar pucker parameters and classification of base pair types given for the PBD-deposited RNA structures.

Sequence(s) and / or secondary structure(s):
Load example: 1 2 3 4 5 6
#tRNA(Phe), yeast (Saccharomyces Scerevisiae) >strand1 gCGGAUUUAgCUCAGuuGGGAGAGCgCCAGAcUgAAgAucUGGAGgUCcUGUGuuCGaUCCACAGAAUUCGCACCA