RNA FRABASE - RNA FRAgments search engine & dataBASE

Sequence & secondary structure in dot-bracket notation

PDB id	NDB id	Strands	Number of models	Functional class	Experimental method	Resolution [Å]	PDB deposition
3J0W		A, B	1	RIBOSOME	Electron Microscopy	14.7	2011-12-07

model 1

>strand_A
uGCCUGGCGGCCGUAGCGCGGUGGUCCCACCUGACCCCAUGCCGAACUCAGAAGUGAAACGCCGUAGCGCCGAUGGUAGUGUGGGGUCUCCCCAUGCGAGAGUAGGGAACUGCCAGGCAU
(((((.((((......(((((((....((((.((...(.....)...)).)..)))...)))))).)..((.......(((((((.....))))))).......))...)))).))))).

>strand_B
gGUUAAGCGACUAAGCGUACACGGUGGAUGCCCUGGCAGUCAGAGGCGAUGAAGGACGUGCUAAUCUGCGAUAAGCGUCGGUAAGGUGAUAUGAACCGUUAUAACCGGCGAUUUCCGAAUGGGGAAACCCAGUGUGUUUCGACACACUAUCAUUAACUGAAUCCAUAGGUUAAUGAGGCGAACCGGGGGAACUGAAACAUCUAAGUACCCCGAGGAAAAGAAAUCAACCGAGAUUCCCCCAGUAGCGGCGAGCGAACGGGGAGCAGCCCAGAGCCUGAAUCAGUGUGUGUGUUAGUGGAAGCGUCUGGAAAGGCGCGCGAUACAGGGUGACAGCCCCGUACACAAAAAUGCACAUGCUGUGAGCUCGAUGAGUAGGGCGGGACACGUGGUAUCCUGUCUGAAUAUGGGGGGACCAUCCUCCAAGGCUAAAUACUCCUGACUGACCGAUAGUGAACCAGUACCGUGAGGGAAAGGCGAAAAGAACCCCGGCGAGGGGAGUGAAAAAGAACCUGAAACCGUGUACGUACAAGCAGUGGGAGCACGCUUAGGCGUGUGACUGCGUACCUUUUGUAUAAUGGGUCAGCGACUUAUAUUCUGUAGCAAGGUUAACCGAAUAGGGGAGCCGAAGGGAAACCGAGUCUUAACUGGGCGUUAAGUUGCAGGGUAUAGACCCGAAACCCGGUGAUCUAGCCAUGGGCAGGUUGAAGGUUGGGUAACACUAACUGGAGGACCGAACCGACUAAUguuGAAAAAUUAGCGGAUGACUUGUGGCUGGGGGUGAAAGGCCAAUCAAACCGGGAGAUAGCUGGUUCUCCCCGAAAGCUAUUUAGGUAGCGCCUCGUGAAUUCAUCUCCGGGGGUAGAGCACUGUUUCGGCAAGGGGGUCAUCCCGACUUACCAACCCGAUGCAAACUGCGAAUACCGGAGAAUGUUAUCACGGGAGACACACGGCGGGuGCUAACGUCCGUCGUGAAGAGGGAAACAACCCAGACCGCCAGCUAAGGUCCCAAAGUCAUGGUUAAGUGGGAAACGAUGUGGGAAGGCCCAGACAGCCAGGAUGUUGGCUUAGAAGCAGCCAUCAUUUAAAGAAAGCGUAAUAGCUCACUGGUCGAGUCGGCCUGCGCGGAAGAUGUAACGGGGCUAAACCAUGCACCGAAGCUGCGGCAGCGACGCUUAUGCGUUGUUGGGUAGGGGAGCGUUCUGUAAGCCUGCGAAGGUGUGCUGUGAGGCAUGCUGGAGGUAUCAGAAGUGCGAAUGCUGACAUAAGUAACGAUAAAGCGGGUGAAAAGCCCGCUCGCCGGAAGACCAAGGGUUCCUGUCCAACGUUAAUCGGGGCAGGGUGAGUCGACCCCUAAGGCGAGGCCGAAAGGCGUAGUCGAUGGGAAACAGGUUAAUAUUCCUGUACUUGGUGUUACUGCGAAGGGGGGACGGAGAAGGCUAUGUUGGCCGGGCGACGGUUGUCCCGGUUUAAGCGUGUAGGCUGGUUUUCCAGGCAAAUCCGGAAAAUCAAGGCUGAGGCGUGAUGACGAGGCACUACGGUGCUGAAGCAACAAAUGCCCUGCUUCCAGGAAAAGCCUCUAAGCAUCAGGUAACAUCAAAUCGUACCCCAAACCGACACaGGUGGUCAGGUAGAGAAUACCAAGGCGCUUGAGAGAACUCGGGUGAAGGAACUAGGCAAAAUGGUGCCGUAACUUCGGGAGAAGGCACGCUGAUAUGUAGGUGAGGUCCCUCGCGGAUGGAGCUGAAAUCAGUCGAAGAUACCAGCUGGCUGCAACUGUUUAUUAAAAACACAGCACUGUGCAAACACGAAAGUGGACGUAUACGGUGUGACGCCUgCCCGGUGCCGGAAGGUUAAUUGAUGGGGUUAGCGCAAGCGAAGCUCUUGAUCGAAGCCCCGGUAAACGGCGGCCGuAACuAuAACGGUCCUAAGGUAGCGAAAuUCCUUGUCGGGUAAGUUCCGACcUGCACGAAUGGCGUAAUGAUGGCCAGGCUGUCUCCACCCGAGACUCAGUGAAAUUGAACUCGCUGUGaAGAUGCAGUGUACCCGCGGCAAGACGGAAAGACCCCGUgAACCUUUACUAUAGCUUGACACUGAACAUUGAGCCUUGAUGUGUAGGAUAGGUGGGAGGCUUUGAAGUGUGGACGCCAGUCUGCAUGGAGCCGACCUUGAAAUACCACCCUUUAAUGUUUGAUGUUCUAACGUUGACCCGUAAUCCGGGUUGCGGACAGUGUCUGGUGGGUAGUUUGACUGgGGCGGUCUCCUCCUAAAGAGUAACGGAGGAGCACGAAGGUUGGCUAAUCCUGGUCGGACAUCAGGAGGUUAGUGCAAUGGCAUAAGCCAGCUUGACUGCGAGCGUGACGGCGCGAGCAGGUGCGAAAGCAGGUCAUAGUGAUCCGGUGGUUCUGAAUGGAAGGGCCAUCGCUCAACGGAUAAAAGGUACUCCGgGGAuAACAGGCuGAUACCGCCCAAGAGUUCAUAUCGACGGCGGUGUUUGGCAcCUCGauGUCGGCUCAUCACAUCCUGGGGCUGAAGUAGGUCCCAAGGGUAUGGCuGUUCGCCAUUUAAAGUGGUACGcGAGCuGGGUUUAGAACGUCGUGAGACAGUuCGGUCCCUAUCUGCCGUGGGCGCUGGAGAACUGAGGGGGGCUGCUCCUAGUACGAGAGGACCGGAGUGGACGCAUCACUGGUGUUCGGGUUGUCAUGCCAAUGGCACUGCCCGGUAGCUAAAUGCGGAAGAGAUAAGUGCUGAAAGCAUCUAAGCACGAAACUUGCCCCGAGAUGAGUUCUCCCUGACCCUUUAAGGGUCCUGAAGGAACGUUGAAGACGACGACGUUGAUAGGCCGGGUGUGUAAGCGCAGCGAUGCGUUGAGCUAACCGGUACUAAUGAACCGUGAGGCUUAACCUU
((((((((......(.(((((((......(((..(((((((((((((......((..((....[[..))......(((((....((..]].....))........)))))....))....(((....)))(((((((....))))))).(..((((.(.........).))))..).))...(.((((.........[.........))))..).........((....))...(((((.....((.]...))....)))))...((((.((((......((((((((((((..(((....(.((......)).).[[(...).(((.....]])))...)))....))))))))))))...))))...)....(((((((...[.......)))))))......(((((].[[[[)))))..)))......)).))))))).))...............((....))....))......(..(((.......)))............))......))))))).).....(.((((..(((((......)))))..))))...(.(........).)..(((((....(((...(((((((..(((...((.....))...)))...((....))..((((.....)))).....)))))))...)))..((.(...((((((.....((.(((((((.(.(....((((((......)))))).....).)...(((.(((((........))))))))..).)))))).))...(((.....)))......))))))......).))..((((((....(((((....)))))..((((((.(..((.((((((.(...((....(((.((((...(((.(((.....)).)).))...)))).)))...).)...).))))))..))...))))))).....((.((((((........)))))).))....(((......)))...((...(.(...(.([[[...(.((((.(...........((..(((((...((.......(..(..(.(..(((.........)))..).).....(..(((......))))..)..)...))...))))).))...........]]].....).)))))).)...).)..)).((.(((((....))))).)).....))))))((.((((....((......((((((((....))))))))...))...))))..)).....))))).(......((.....((((((.......))))))(..(....((((..((..(((((((....(.....)..))))))....[[(((..((...(((...(((....)))...)))...))...(((((........)))))]](((.(((((((.....((((.....((...((...(((((((((((....{{{...))))))((..((((...((((((((((((.((.....))))))))))..))))..[))))...))(..((((......))))...))))))....))....)).(..).....)))).........))))))).))).))).))).....((......)).))))..(((.....)))...)..)..(((.....((((((((.((..(............(((((....(.{..).....)))))((((((.....(((.....(((..)])).....)))...))))))(...).......(((((((((...((.........))...(((((((.....(.(....).).......))))))).}..((.(((..(((((((....(.....(..((.((..((....))...)).))...)....)..)))))..)))))(.(((.........))).)........((..........(((.(.......).)))..)..)....)).....)).)))))))....))).))))))))..))))).....))....((((..........))))..((((((((.(((.........((((.(...((..(((((.(((.(((((..((.(((((((..(...(......[..(..((...(.......(...(((......)))...)....)...........].)).).)...)..))))))).))....(((.(((.((.....)).))))))....))))).)))..)))))....(......[)..(((((...........].)))))(..(...((((((..(.((((...........))))...).((.[.[[[)).....))))))...((((..((.(..{.).))..))))..((....))..).]]].].....(((((((.((..]]]]..))))))))).....)}......)).....))))).......((...(.((((((...(.........)...))))))...)..).).......((.((.(((.((..(..((.(((......))).))....).(((((.....))))).....)).))..)...))..))....(.(((((....))).)).)........)))))))))))[...(((((.(...((((..(((((.(.....(....)....).))))).(..((...((((...(((((((((.(}}}.).))))..)))))...)))).))..)...(((....((((.............))))....))).))))..]....).)))))(.((((((...))))))(....((..(.(((.......))).)....((((((((..((....(((((....)))))...))...))))).))).....))..).)))))))))..