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Sequence & secondary structure in dot-bracket notation
       
 PDB id   NDB id  Strands     Number of models     Functional class     Experimental method     Resolution [Å]     PDB deposition
3KNJ NA0389 A, V, W, X, Y1RIBOSOME/ANTIBIOTICX-Ray Difraction3.152009-11-12

model 1
>strand_A
UUUGUuGGAGAGUUUGAUCCUGGCUCAGGGUGAACGCUGGCGGCGUGCCUAAGACAUGCAAGUCGUGCGGGCCGCGGGGUUUUACUCCGUGGUCAGCGGCGGACGGGUGAGUAACGCGUGGGUGACCUACCCGGAAGAGGGGGACAACCCGGGGAAACUCGGGCUAAUCCCCCAUGUGGACCCGCCCCUUGGGGUGUGUCCAAAGGGCUUUGCCCGCUUCCGGAUGGGCCCGCGUCCCAUCAGCUAGUUGGUGGGGUAAUGGCCCACCAAGGCGACGACGGGUAGCCGGUCUGAGAGGAUGGCCGGCCACAGGGGCACUGAGACACGGGCCCCACUCCUACGGGAGGCAGCAGUUAGGAAUCUUCCGCAAUGGGCGCAAGCCUGACGGAGCGACGCCGCUUGGAGGAAGAAGCCCUUCGGGGUGUAAACUCCUGAACCCGGGACGAAACCCCCGACGAGGGGACUGACGGUACCGGGGUAAUAGCGCCGGCCAACUCCGUGCCAGCAGCCGCGGUAAUACGGAGGGCGCGAGCGUUACCCGGAUUCACUGGGCGUAAAGGGCGUGUAGGCGGCCUGGGGCGUCCCAUGUGAAAGACCACGGCUCAACCGUGGGGGAGCGUGGGAUACGCUCAGGCUAGACGGUGGGAGAGGGUGGUGGAAUUCCCGGAGUAGCGGUGAAAUGCGCAGAUACCGGGAGGAACGCCGAUGGCGAAGGCAGCCACCUGGUCCACCCGUGACGCUGAGGCGCGAAAGCGUGGGGAGCAAACCGGAUUAGAUACCCGGGUAGUCCACGCCCUAAACGAUGCGCGCUAGGUCUCUGGGUCUCCUGGGGGCCGAAGCUAACGCGUUAAGCGCGCCGCCUGGGGAGUACGGCCGCAAGGCUGAAACUCAAAGGAAUUGACGGGGGCCCGCACAAGCGGUGGAGCAUGUGGUUUAAUUCGAAGCAACGCGAAGAACCUUACCAGGCCUUGACAUGCUAGGGAACCCGGGUGAAAGCCUGGGGUGCCCCGCGAGGGGAGCCCUAGCACAGGUGCUGCAUGGCCGUCGUCAGCUCGUGCCGUGAGGUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCCCGCCGUUAGUUGCCAGCGGUUCGGCCGGGCACUCUAACGGGACUGCCCGCGAAAGCGGGAGGAAGGAGGGGACGACGUCUGGUCAGCAUGGCCCUUACGGCCUGGGCGACACACGUGCUACAAUGCCCACUACAAAGCGAUGCCACCCGGCAACGGGGAGCUAAUCGCAAAAAGGUGGGCCCAGUUCGGAUUGGGGUCUGCAACCCGACCCCAUGAAGCCGGAAUCGCUAGUAAUCGCGGAUCAGCCAUGCCGCGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCACGCCAUGGGAGCGGGCUCUACCCGAAGUCGCCGGGAGCCUACGGGCAGGCGCCGAGGGUAGGGCCCGUGACUGGGGCGAAGUCGUAACAAGGUAGCUGUACCGGAAGGUGCGGCUGGA
-----....((((..[.[[[..))))..(((.(.(((..((((.((((....(((.(((..(((..((..(((((..---------..)))))..)))))......(((......((((((((..((...((.((((.((.(.....(((((......)))))......).)).....(...((((......))))...)....(..(...)..).)))).))..)))))))))).(.....(....(.(.((((.......)))).).)..).......)...((((((((....))))...))))))).((.((............)).)).(((.(...))))...)))))).).....(.(((...(((((....)))).))))).)).).))))...(((......((((....)))).....)))......(((....(.....(.(.....).)......).....))).......(((...[......((......((..].))........))....)))..))).))))...............[...(.((((...(((.(..(((..(...((((((.......(((((.....))))).....)))))).....).)))..)..(((.(((((...(((((.(......(((((....((........)).......))))).............((....)).).)))))..)))))..))..))))...))))....(((((....(.....((...........)).....).)))))......{....((((...((((((.(.(...).).))))))....(..].).......)))).)....(((.......(((....))).....)))...]]].](((((.((((((...(..((.....(((((((((.......((........))...........(((..(........((........(((.(....).))).......................))........((....(((.(......(((((((.(....).)...(((......)))...)))))).......((.((.(..............................).))...........................)).........)..))...)..)).......)..))).....).)))))))).....(..(..(.......(......((........))........).......)..)..)...........(((.((..........)).))).............)).....(((..((..........))..)))......).....))))))))).))..(.(..((...((((.(((..(((.((((..(((...(..(((.....((....))..)))..)..)))..)))).)))..))).))))....))...)..)....(((((((....)))))))..}..
>strand_V
AAAAAGGAAAUAaAAAUGCAGUUCAAUCUA
------------...[.[.[[.--------
>strand_W
UGGGGUAUCGCCAAGCGGUAAGGCACCGGAUUCUGAUUCCGGCAUUCCGAGGUUCGAAUCCUCGUACCCCAGCCA
((((((.....(.....{...)...((.(...]]....).))......(.((..}....)).)..))))))....
>strand_X
cGCGGGGUGGAGCAGCCUGGUAGCUCGUCGGGCUCAUAACCCGAAGGUCGUCGGUUCAAAUCCGGCCCCCGCAACCA
.(((((...((((.........)))).(((.(..].]..).))).....((.(.........).)).))))).....
>strand_Y
uGGGGUAUCGCCAAGCGGUAAGGCACCGGAUUGUGAUUCCGGCUUUCCGAGGUUCGAAUCCUCGUACCCCAGCCA
((((.(....(...........).....(.........)..........................).))))....