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Secondary structures
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Institute of Computing Science
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Poznan University of Technology
Institute of Bioorganic Chemistry
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Polish Academy of Sciences
Sequence & secondary structure in dot-bracket notation
PDB id
NDB id
Strands
Number of models
Functional class
Experimental method
Resolution [Å]
PDB deposition
2GYB
A, U, V, W
1
RIBOSOME
Electron Microscopy
15
2006-05-09
model 1
>strand_A
uGAAGAGUUUGAUCAUGGCUCAGAUUGAACGCUGGCGGCAGGCCUAACACAUGCAAGUCGAACGGUCCGGAAGAAGCUUUCUUUUGGACAGUGGCGGACGGGUGAGUAAUGUCUGGGAAACUGCCUGAUGGAGGGGGAUAACUACUGGAAACGGUAGCUAAUACCGCAUAACGUCGCAAGACCAAAGAGGUUUUCUUGCCAUCGGAUGUGCCCAGAUGGGAUUAGCUAGUAGGUGGGGUAACGGCUCACCUAGGCGACGAUCCCUAGCUGGUCUGAGAGGAUGACCAGCCACACUGGAACUGAGACACGGUCCAGACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGCACAAUGGGCGCAAGCCUGAUGCAGCCAUGCCGCGUGUAUGAAGAAGGCCUUCGGGUUGUAAAGUACUUUCGCGGGGAGGAAGGGAGCGACGAGCUCAUUGACGUUACCCGCGAAGUAGCACCGGCUAACUCCGUGCCAGCAGCCGCGGUAAUACGGAGGGUGCAAGCGUUAAUCGGAAUUACUGGGCGUAAAGCGCACGCAGGCGGUUUGUUAAGUCAGAUGUGAAAUCCCCGGGCUCAACCUGGGAACUGCAUCUGAUACUGGCAAGCUUGAGUCUCGUAGAGGGGGGUAGAAUUCCAGGUGUAGCGGUGAAAUGCGUAGAGAUCUGGAGGAAUACCGGUGGCGAAGGCGGCCCCCUGGACGAAGACUGACGCUCAGGUGCGAAAGCGUGGGGAGCAAACAGGAUUAGAUACCCUGGUAGUCCACGCCGUAAACGAUGUCGACUUGGAGGUUGUGUCUCGUGGCUUCCGGAGCUAACGCGUUAAGUCGACCGCCUGGGGAGUACGGCCGCAAGGUUAAAACUCAAAUGAAUUGACGGGGGCCCGCACAAGCGGUGGAGCAUGUGGUUUAAUUCGAUGCAACGCGAAGAACCUUACCUGGUCUUGACAUCCACGGAAGUUUUCAGAGAUGAGAAUGUGCCUUCGGGAACCGUGAGACAGGUGCUGCAUGGCUGUCGUCAGCUCGUGUUGUGAAAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCUUAUCCUUUGUUGCCAGCGGUCCGGCCGGGAACUCAAAGGAGACUGCCAGUGAUAACUGGAGGAAGGUGGGGAUGACGUCAAGUCAUCAUGGCCCUUACGACCAGGGCUACACACGUGCUACAAUGGCGACUACAAAGAGAAGCGACCUCGCGAGAGCAAGCGGACCUCAUAAAGUGCGUCGUAGUCCGGAUUGGAGUCUGCAACUCGACUCCAUGAAGUCGGAAUCGCUAGUAAUCGUGGAUCAGAAUGCCACGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCACACCAUGGGAGUGGGUUGCAAAAGAAGUAGGUAGCAACCUUCGGGGCGCUUACCACUUUGUGAUUCAUGACUGGGGUGAAGUCGUAACAAGGUAACCGUAGGGGAACCUGCGGUUGGAUCA
....((((......[..))))...(.......(...(((.((.....(.(.(((..(((..((.((((((((.(.....).)))))))).)))))......(((......(((((((..((...(((.(((.(.((.....(((((......)))))......)).).....(((....)))....((((...)))).))).)))..)).)))))))(((....(.(..((((((((.......))))))))).)......)))..((.(((((....))))...).))))).((((..............)))).((((....))))...)))).).........(((....((((....))))..)))..))..))).....(........((((....)))).......).....(((((........((((.....))))..........)))))......((((([[.....((((......(..]])........)))).)))))..).....).............(([[.....(((....(((.((.((((.(((((((((.......((((((.....)))))).....)))))))..)))))).))...(((.(((....(((((.(....(((((((....((........)).......)))))))....................).)))))...)))..)))...)))....))).....(((((...((...((((.........))))...)))))))...........((((((..(((((((((.....)))))))))...((..]])).....)))))).))....(......((((....))))....).....].....(.((.(((((.(........((..(((((...(........(........)............((((((................(.((((....)))).).....(....).............((.......((((.........((((((((....)))..(((........)))..)))))......(((..((((((........(((.....))).......)))))).....(((((....))))).........)))..........))...))....))....)))))).....)....)))))...........(.....(((...(...(((....)))...).....))).....)............(....(((..((........))..)))....).....))........(((((((.........)))))))...........).)))))))..)........(..(.(.(..(((...(((((((((((....((((((.....((....))..))))))...)))))))))))...)))..).)..)..).........(((((((((....)))))))))......
>strand_U
gCGGAUUUAGCUCAGUUGGGAGAGCGCCAGACUGAAGAUCUGGAGGUCCUGUGUUCGAUCCACAGAAUUCGCACCA
(((((((..((((........)))).((((.........)))).....(((((.......))))))))))))....
>strand_V
gCGGAUUUAGCUCAGUUGGGAGAGCGCCAGACUGAAGAUCUGGAGGUCCUGUGUUCGAUCCACAGAAUUCGCACCA
(((((((..((((........)))).((((.........)))).....(((((.......))))))))))))....
>strand_W
gCGGAUUUAGCUCAGUUGGGAGAGCGCCAGACUGAAGAUCUGGAGGUCCUGUGUUCGAUCCACAGAAUUCGCACCA
(((((((..((((........)))).((((.........)))).....(((((.......))))))))))))....