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References

Any published work which has made use of RNA FRABASE should cite at least one of the following papers:
  • M. Popenda, M. Blazewicz, M. Szachniuk, R.W. Adamiak.
    RNA FRABASE version 1.0: an engine with a database to search for the three-dimensional fragments within RNA structures.
    Nucleic Acids Research 36, 2008, D386-D391 (published online on October 5, 2007, doi:10.1093/nar/gkm786).

    This paper refers to the following issues:
    • what is RNA FRABASE?
    • the general idea of RNA FRABASE construction and usage
    • an introduction to the RNA fragments database architecture and search engine functionality


  • M. Popenda, M. Szachniuk, M. Blazewicz, S. Wasik, E.K. Burke, J. Blazewicz, R.W. Adamiak.
    RNA FRABASE 2.0: an advanced web-accessible database with the capacity to search the three-dimensional fragments within RNA structures.
    BMC Bioinformatics, 2010, 11:231 (published online on May 6, 2010, doi:10.1186/1471-2105-11-231).

    This paper presents:
    • the contents of database in 2.0 version
    • a description of advanced search options including functions to find predefined motifs


Supporting paper:
  • M. Popenda, L. Bielecki, R.W. Adamiak.
    High-throughput method for the prediction of low-resolution, three-dimensional RNA structures.
    Nucleic Acids Symposium Series 50, 2006, 67-68 (doi:10.1093/nass/nrl033).