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Secondary structures
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Institute of Computing Science
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Poznan University of Technology
Institute of Bioorganic Chemistry
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Polish Academy of Sciences
Sequence & secondary structure in dot-bracket notation
PDB id
NDB id
Strands
Number of models
Functional class
Experimental method
Resolution [Å]
PDB deposition
2RKJ
PR0311
C, D, G, H, K, L, O, P
1
LIGASE/RNA
X-Ray Difraction
4.5
2007-10-16
model 1
>strand_C
GAGCCUUUAUACAGUAAUGUAUAUCGAAAAAUCCUCUAAUUCAGGGAACACCUAAACAAACUAAGAUGUAGGCAAUCCUGAGCUAAGCUCUGCGGAAACGCAGAGAAAGUGCAACGACUAUUCCGAUAGGAAGUAGGGUCAAGUGACUCGAAAUGGGGAUUACCCUUCUAGGGUAGUGAUAUAGUCUGAACAUAUAUGGAAACAUAUAGAAGGAUAGGAGUAACGAACCUAUCCGUAACAUAAUUG
..(((..((((((....))))))..)....((((((....((((((.....(......--------....)....))))))(((...(((((((....)))))))..)))...[.[.[[.((((..{{))))...(((((....))))).....))))))((((.......)))).......]].]]......(.(((....))).)....((((((...........))))))............
>strand_D
GCUU
))..
>strand_G
GAGCCUUUAUACAGUAAUGUAUAUCGAAAAAUCCUCUAAUUCAGGGAACACCUAAACAAACUAAGAUGUAGGCAAUCCUGAGCUAAGCUCUGCGGAAACGCAGAGAAAGUGCAACGACUAUUCCGAUAGGAAGUAGGGUCAAGUGACUCGAAAUGGGGAUUACCCUUCUAGGGUAGUGAUAUAGUCUGAACAUAUAUGGAAACAUAUAGAAGGAUAGGAGUAACGAACCUAUCCGUAACAUAAUUG
..(((..((((((....))))))..)....((((((....((((((.....(......--------....)....))))))(((...(((((((....)))))))..)))...[.[.[[.((((..}}))))...(((((....))))).....))))))((((.......)))).......]].]]......(.(((....))).)....((((((...........))))))............
>strand_H
GCUU
))..
>strand_K
GAGCCUUUAUACAGUAAUGUAUAUCGAAAAAUCCUCUAAUUCAGGGAACACCUAAACAAACUAAGAUGUAGGCAAUCCUGAGCUAAGCUCUGCGGAAACGCAGAGAAAGUGCAACGACUAUUCCGAUAGGAAGUAGGGUCAAGUGACUCGAAAUGGGGAUUACCCUUCUAGGGUAGUGAUAUAGUCUGAACAUAUAUGGAAACAUAUAGAAGGAUAGGAGUAACGAACCUAUCCGUAACAUAAUUG
..(((..((((((....))))))..)....((((((....((((((.....(......--------....)....))))))(((...(((((((....)))))))..)))...[.[.[[.((((....))))...(((((....))))).....))))))((((.......)))).......]].]]......(.(((....))).)....((((((...........))))))............
>strand_L
GCUU
))..
>strand_O
GAGCCUUUAUACAGUAAUGUAUAUCGAAAAAUCCUCUAAUUCAGGGAACACCUAAACAAACUAAGAUGUAGGCAAUCCUGAGCUAAGCUCUGCGGAAACGCAGAGAAAGUGCAACGACUAUUCCGAUAGGAAGUAGGGUCAAGUGACUCGAAAUGGGGAUUACCCUUCUAGGGUAGUGAUAUAGUCUGAACAUAUAUGGAAACAUAUAGAAGGAUAGGAGUAACGAACCUAUCCGUAACAUAAUUG
..(((..((((((....))))))..)....((((((....((((((.....(......--------....)....))))))(((...(((((((....)))))))..)))...[.[.[[.((((....))))...(((((....))))).....))))))((((.......)))).......]].]]......(.(((....))).)....((((((...........))))))............
>strand_P
GCUU
))..