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Institute of Computing Science
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Poznan University of Technology
Institute of Bioorganic Chemistry
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Polish Academy of Sciences
Sequence & secondary structure in dot-bracket notation
PDB id
NDB id
Strands
Number of models
Functional class
Experimental method
Resolution [Å]
PDB deposition
3IZV
A, B, D, E
1
RIBOSOME
Electron Microscopy
2011-01-07
model 1
>strand_A
aAAUUGAAGAGUUUGAUCAUGGCUCAGAUUGAACGCUGGCGGCAGGCCUAACACAUGCAAGUCGAACGGUAACAGGAAGAAGCUUGCUUCUUUGCUGACGAGUGGCGGACGGGUGAGUAAUGUCUGGGAAACUGCCUGAUGGAGGGGGAUAACUACUGGAAACGGUAGCUAAUACCGCAUAACGUCGCAAGACCAAAGAGGGGGACCUUCGGGCCUCUUGCCAUCGGAUGUGCCCAGAUGGGAUUAGCUAGUAGGUGGGGUAACGGCUCACCUAGGCGACGAUCCCUAGCUGGUCUGAGAGGAUGACCAGCCACACUGGAACUGAGACACGGUCCAGACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGCACAAUGGGCGCAAGCCUGAUGCAGCCAUGCCGCGUGUAUGAAGAAGGCCUUCGGGUUGUAAAGUACUUUCAGCGGGGAGGAAGGGAGUAAAGUUAAUACCUUUGCUCAUUGACGUUACCCGCAGAAGAAGCACCGGCUAACUCCGuGCCAGCAGCCgCGGUAAUACGGAGGGUGCAAGCGUUAAUCGGAAUUACUGGGCGUAAAGCGCACGCAGGCGGUUUGUUAAGUCAGAUGUGAAAUCCCCGGGCUCAACCUGGGAACUGCAUCUGAUACUGGCAAGCUUGAGUCUCGUAGAGGGGGGUAGAAUUCCAGGUGUAGCGGUGAAAUGCGUAGAGAUCUGGAGGAAUACCGGUGGCGAAGGCGGCCCCCUGGACGAAGACUGACGCUCAGGUGCGAAAGCGUGGGGAGCAAACAGGAUUAGAUACCCUGGUAGUCCACGCCGUAAACGAUGUCGACUUGGAGGUUGUGCCCUUGAGGCGUGGCUUCCGGAGCUAACGCGUUAAGUCGACCGCCUGGGGAGUACGGCCGCAAGGUUAAAACUCAAAUGAAUUGACGGGGGCCCGCACAAGCGGUGGAGCAUGUGGUUUAAUUCGAUgcAACGCGAAGAACCUUACCUGGUCUUGACAUCCACGGAAGUUUUCAGAGAUGAGAAUGUGCCUUCGGGAACCGUGAGACAGGUGCUGCAUGGCUGUCGUCAGCUCGUGUUGUGAAAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCUUAUCCUUUGUUGCCAGCGGUCCGGCCGGGAACUCAAAGGAGACUGCCAGUGAUAAACUGGAGGAAGGUGGGGAUGACGUCAAGUCAUCAUGgCCCUUACGACCAGGGCUACACACGUGCUACAAUGGCGCAUACAAAGAGAAGCGACCUCGCGAGAGCAAGCGGACCUCAUAAAGUGCGUCGUAGUCCGGAUUGGAGUCUGCAACUCGACUCCAUGAAGUCGGAAUCGCUAGUAAUCGUGGAUCAGAAUGCCACGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCGUcACACCAUGGGAGUGGGUUGCAAAAGAAGUAGGUAGCUUAACCUUCGGGAGGGCGCUUACCACUUUGUGAUUCAUGACUGGGGUGAAGUCGuAACAAGGUAACCGUAGGgGaaCCUGCGGUUGGAUCACCUCCUUA
........((((..[.[[[..)))).((((.(((((..(((((((.(....(((.(((..(((..((.((..((((((((((....))))))).)))))..)))))......(((......((.((((..((....((((((...((.....((((((....))))))......)).......(((....)))....(((((....(....)..))))).))))))...)).)))).))(((....(((...((.(((.........))).)).)))......)))..((((.(((....)))....))))))).(((((............))))).((((....))))...)))))).).....(.(((....((((....))))..))))..).))))))..((((......((((....)))).....)))).....(((((..((....((((((((.......)))))))).....)..).))))).......(.(.([[[...(((((.....((.]]])).......)))))).).)..)))))))))..........((([[...(.((((...(((...(((((.((((((((.(......((((((.....))))))....).))))))..)))))))....((((((.((...(((((((....((((((((...((........))......))))))))...........((....)).)))))))..))..)))))..))))...))))....((((((...((...(((...........)))...))))))))..........(((((...((((.(((((.........))))).))))...((..]]))......))))))))).(((......((((....))))....)))...]]].](((((.((((((..(...(((.(...((((((.((......(..........)...........((((((..(...(((((((..(((((((....)))))))...((....))..))))).))).((.(((...(((((..(....(..((((((....)))..((((......))))..)))..).......((.(.(((((...((..(((.....)))))....))))).)..(...((((.....))))......)..)).......)...)))...)).)))))....))))))....))..))))))..(...(((((((.....((...((...(((....)))...)).....)).....)))))))......(....(((((((........)))))))....)..)..).))).....(((((((.........))))))).......)....))))))))).))..(.(.((.(.((((..((..((((((((((((....((((((.((((..((....)).))))))))))...))))))))))))..))..))))..).))...)..)..(((((((((....)))))))))..............
>strand_B
gCCCGGAuAGCUCAGuCGGuAGAGCAGGGGAuUGAAaAuCCCCGUguCCUUGGuuCGAUUCCGAGUCCGGGCACCA
(.(((((..((((........)))).(((......{....))).......(((.......)))..))))).)....
>strand_D
AUUAUGUUUUUUUUUUGAUUUGCC
.........[[[}...........
>strand_E
gCCCGGAuAGCUCAGuCGGuAGAGCAGGGGAuUGAAaAuCCCCGUguCCUUGGuuCGAUUCCGAGUCCGGGCACCA
(((((((..((((........)))).((((...]]]...)))).....(((((.......))))))))))))....