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Institute of Computing Science
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Poznan University of Technology
Institute of Bioorganic Chemistry
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Polish Academy of Sciences
Sequence & secondary structure in dot-bracket notation
PDB id
NDB id
Strands
Number of models
Functional class
Experimental method
Resolution [Å]
PDB deposition
3J0V
A, B, C, D
1
RIBOSOME
Electron Microscopy
14.7
2011-12-07
model 1
>strand_A
aAAUUGAAGAGUUUGAUCAUGGCUCAGAUUGAACGCUGGCGGCAGGCCUAACACAUGCAAGUCGAACGGUAACAGGAAGAAGCUUGCUUCUUUGCUGACGAGUGGCGGACGGGUGAGUAAUGUCUGGGAAACUGCCUGAUGGAGGGGGAUAACUACUGGAAACGGUAGCUAAUACCGCAUAACGUCGCAAGACCAAAGAGGGGGACCUUCGGGCCUCUUGCCAUCGGAUGUGCCCAGAUGGGAUUAGCUAGUAGGUGGGGUAACGGCUCACCUAGGCGACGAUCCCUAGCUGGUCUGAGAGGAUGACCAGCCACACUGGAACUGAGACACGGUCCAGACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGCACAAUGGGCGCAAGCCUGAUGCAGCCAUGCCGCGUGUAUGAAGAAGGCCUUCGGGUUGUAAAGUACUUUCAGCGGGGAGGAAGGGAGUAAAGUUAAUACCUUUGCUCAUUGACGUUACCCGCAGAAGAAGCACCGGCUAACUCCGuGCCAGCAGCCgCGGUAAUACGGAGGGUGCAAGCGUUAAUCGGAAUUACUGGGCGUAAAGCGCACGCAGGCGGUUUGUUAAGUCAGAUGUGAAAUCCCCGGGCUCAACCUGGGAACUGCAUCUGAUACUGGCAAGCUUGAGUCUCGUAGAGGGGGGUAGAAUUCCAGGUGUAGCGGUGAAAUGCGUAGAGAUCUGGAGGAAUACCGGUGGCGAAGGCGGCCCCCUGGACGAAGACUGACGCUCAGGUGCGAAAGCGUGGGGAGCAAACAGGAUUAGAUACCCUGGUAGUCCACGCCGUAAACGAUGUCGACUUGGAGGUUGUGCCCUUGAGGCGUGGCUUCCGGAGCUAACGCGUUAAGUCGACCGCCUGGGGAGUACGGCCGCAAGGUUAAAACUCAAAUGAAUUGACGGGGGCCCGCACAAGCGGUGGAGCAUGUGGUUUAAUUCGAUgcAACGCGAAGAACCUUACCUGGUCUUGACAUCCACGGAAGUUUUCAGAGAUGAGAAUGUGCCUUCGGGAACCGUGAGACAGGUGCUGCAUGGCUGUCGUCAGCUCGUGUUGUGAAAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCUUAUCCUUUGUUGCCAGCGGUCCGGCCGGGAACUCAAAGGAGACUGCCAGUGAUAAACUGGAGGAAGGUGGGGAUGACGUCAAGUCAUCAUGgCCCUUACGACCAGGGCUACACACGUGCUACAAUGGCGCAUACAAAGAGAAGCGACCUCGCGAGAGCAAGCGGACCUCAUAAAGUGCGUCGUAGUCCGGAUUGGAGUCUGCAACUCGACUCCAUGAAGUCGGAAUCGCUAGUAAUCGUGGAUCAGAAUGCCACGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCGUcACACCAUGGGAGUGGGUUGCAAAAGAAGUAGGUAGCUUAACCUUCGGGAGGGCGCUUACCACUUUGUGAUUCAUGACUGGGGUGAAGUCGuAACAAGGUAACCGUAGGgGaaCCUGCGGUUGGAUCACCUCCUUA
........((((....[[[..)))).((....((((..(((((.(.(....(((.(((..(((..((.((..(((..((((......))))...)))))..)))))........(.......((((((..((...((.((((.(.((.....((((((....))))))......)).).....(((....)))....(.((((...(....).)))).).)))).))..)).)))))).(((....(((...((((((.........)))))).)))......)))..(((.((((....))))....))))...((.((............)).)).((((....))))...)))))).).....(.(((...(((((....)))).)))))..)..)))))..((((......(.((....)).).....))))...(.(((((..((....((.....(.......).....)).....)..).)))))....)..((((([[[...(((((.....((.]]])).......))))))))))..))))...))..........((([[...(.((((...(((.(((((((.((.((.(((........(((((.....)))))......))).))...)))))))))..((.((((.(...((((((((...((((((((...((........))......))))))).)..).......((....)).)))))))..).).))).)..))))...))))....(.((((...(....((((.........))))....))))).)..........(.((((..(((((.((((((.....)))))).)))))...((..]])).....)))).))))).(((......((((....))))....)))...]]]..(.(((.(((((((.((..(((((..(((((.((((......(..........)..........((((.((..(...(((((((..(((((((....)))))))...(......)..))))).))).((..((...(.((((.(....(((((((((....)))..((((......))))..))))))......(((..((.(.(...((..(((.....)))))....).).))...(...(.((.....)).)......)..)))......).).)))....).)).))....)).))))...)).)).))))).(...(((((((.....(.(..((.....(....).....))....).).....)))))))......(....(((((((........)))))))....)..)..))))).....((((((...........))))))......))...))))))))))..)..(.(.((.(.((((.(.....((((((((((.....((((.(...((..((....)).))..).))))....)))))))))).....).))))..).))...)..)..(..((..((....))..))..)..............
>strand_B
aGGGGCGuAGUUCAAuuGGuAGAGCACCGGUcUCCAaAACCGGGUgUUGGGAGuuCGAGUCUCUCCGCCCCUGCCA
(((((((..((.(........).)).(((((..[[[..)))))......(((.........))).)))))))....
>strand_C
aGGAUAAGUGCAUUAUGUUUAUGUGGUGAUUUGCCCUUCUGUAGCCA
....................{{{]]].....................
>strand_D
cGCGGGGuGGAGCAGCCUGGuAGCUCGUCGGGcUCAUAACCCGAAGAUCGUCGGuuCAAAUCCGGCCCCCGCAACCA
.((((((..((((.........)))).((((...}}}...)))).....(((((.......))))))))))).....