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Institute of Computing Science
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Sequence & secondary structure in dot-bracket notation
PDB id
NDB id
Strands
Number of models
Functional class
Experimental method
Resolution [Å]
PDB deposition
3J13
A, B, C
1
RIBOSOME
Electron Microscopy
13.1
2011-12-09
model 1
>strand_A
aAAUUGAAGAGUUUGAUCAUGGCUCAGAUUGAACGCUGGCGGCAGGCCUAACACAUGCAAGUCGAACGGUAACAGGAAGAAGCUUGCUUCUUUGCUGACGAGUGGCGGACGGGUGAGUAAUGUCUGGGAAACUGCCUGAUGGAGGGGGAUAACUACUGGAAACGGUAGCUAAUACCGCAUAACGUCGCAAGACCAAAGAGGGGGACCUUCGGGCCUCUUGCCAUCGGAUGUGCCCAGAUGGGAUUAGCUAGUAGGUGGGGUAACGGCUCACCUAGGCGACGAUCCCUAGCUGGUCUGAGAGGAUGACCAGCCACACUGGAACUGAGACACGGUCCAGACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGCACAAUGGGCGCAAGCCUGAUGCAGCCAUGCCGCGUGUAUGAAGAAGGCCUUCGGGUUGUAAAGUACUUUCAGCGGGGAGGAAGGGAGUAAAGUUAAUACCUUUGCUCAUUGACGUUACCCGCAGAAGAAGCACCGGCUAACUCCGuGCCAGCAGCCgCGGUAAUACGGAGGGUGCAAGCGUUAAUCGGAAUUACUGGGCGUAAAGCGCACGCAGGCGGUUUGUUAAGUCAGAUGUGAAAUCCCCGGGCUCAACCUGGGAACUGCAUCUGAUACUGGCAAGCUUGAGUCUCGUAGAGGGGGGUAGAAUUCCAGGUGUAGCGGUGAAAUGCGUAGAGAUCUGGAGGAAUACCGGUGGCGAAGGCGGCCCCCUGGACGAAGACUGACGCUCAGGUGCGAAAGCGUGGGGAGCAAACAGGAUUAGAUACCCUGGUAGUCCACGCCGUAAACGAUGUCGACUUGGAGGUUGUGCCCUUGAGGCGUGGCUUCCGGAGCUAACGCGUUAAGUCGACCGCCUGGGGAGUACGGCCGCAAGGUUAAAACUCAAAUGAAUUGACGGGGGCCCGCACAAGCGGUGGAGCAUGUGGUUUAAUUCGAUgcAACGCGAAGAACCUUACCUGGUCUUGACAUCCACGGAAGUUUUCAGAGAUGAGAAUGUGCCUUCGGGAACCGUGAGACAGGUGCUGCAUGGCUGUCGUCAGCUCGUGUUGUGAAAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCUUAUCCUUUGUUGCCAGCGGUCCGGCCGGGAACUCAAAGGAGACUGCCAGUGAUAAACUGGAGGAAGGUGGGGAUGACGUCAAGUCAUCAUGgCCCUUACGACCAGGGCUACACACGUGCUACAAUGGCGCAUACAAAGAGAAGCGACCUCGCGAGAGCAAGCGGACCUCAUAAAGUGCGUCGUAGUCCGGAUUGGAGUCUGCAACUCGACUCCAUGAAGUCGGAAUCGCUAGUAAUCGUGGAUCAGAAUGCCACGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCGUcACACCAUGGGAGUGGGUUGCAAAAGAAGUAGGUAGCUUAACCUUCGGGAGGGCGCUUACCACUUUGUGAUUCAUGACUGGGGUGAAGUCGuAACAAGGUAACCGUAGGgGaaCCUGCGGUUGGAUCACCUCCUUA
........((((....[[[..)))).((....((((..(((((.(.(....((..(((..(((..((.((..(((.(((((......)))))..)))))..))))).......((........(((((..((....(.((((.(.((.....((((((....))))))......)).).....(((....)))....(.((((..((....)))))).).)))).)...)).)))))..(((....((.....(..((.........))..)...))......)))..(((.((((....))))....)))))..(((((............))))).((((....))))...))).)).).....(.(((....((.(....).))..))))..)..)))))..((((......((((....)))).....))))...(.(((((........((.(.(.(.......))..).))..........)))))....)..((((([[[...(((((.....(..]]].).......))))))))))..))))...))..........((([[.....((((...(((.(((((((.(((((.(.(.......((((((.....)))))).....).).)))..)))))))))..(((((((((...((((((((...((((((((...((........))......))))))).)..).......((....)).)))))))..))).)))))..))))...))))....(.((((...((...((((.........))))...)))))).)..........((((((..((((..((((((.....))))))..))))...((..]])).....)))))).))).(((......((((....))))....)))...]]]..(((((.(((((((.((..(((.(..((((((((((......((........))..........(((((((..(...(((((((..(((((((....)))))))...(......)..))))).))).((..((...(.((((.(....((((.((((....)))...(((......)))...).))))......(((..((((.(...((..(((.....)))))....).))))...(..(..((.....))..).....)..)))......).).)))....).)).))....)))))))...)).)))))))).(....((((((.....(((..((.....(....).....))....))).....)))))).......(....(((((((........)))))))....)..)..).))).....(((((((.........)))))))......))...)))))))))).))..(...((...((((.......(((((((((((....((((....(((..((....)).)))...))))...))))))))))).......))))....))......)..(((((..((....))..)))))..............
>strand_B
aGGAUAAGUGCAUUAUGUUUAUGUGGUGAUUUGCCCUUCUGUAGCCA
....................[[[........................
>strand_C
cGCGGGGuGGAGCAGCCUGGuAGCUCGUCGGGcUCAUAACCCGAAGAUCGUCGGuuCAAAUCCGGCCCCCGCAACCA
.((((((..((((.........)))).(((((..]]]..))))).....(((((.......))))))))))).....
