You are 4275293 visitor.
Currently 12 users online.


Sequence & secondary structure in dot-bracket notation
       
 PDB id   NDB id  Strands     Number of models     Functional class     Experimental method     Resolution [Å]     PDB deposition
3J3V A, B1RIBOSOMEElectron Microscopy13.32013-04-28


model 1
>strand_A
gGUUAAGUUAGAAAGGGCGCACGGUGGAUGCCUUGGCACUAGGAGCCGAUGAAGGACGGGACGAACACCGAUAUGCUUCGGGGAGCUGUAAGCAAGCUUUGAUCCGGAGAUUUCCGAAUGGGGAAACCCACCACUCGUAAUGGAGUGGUAUCCAUAUCUGAAUUCAUAGGAUAUGAGAAGGCAGACCCGGGGAACUGAAACAUCUAAGUACCCGGAGGAAGAGAAAGCAAAUGCGAUUCCCUGAGUAGCGGCGAGCGAAACGGGAUUAGCCCAAACCAAGAGGCUUGCCUCUUGGGGUUGUAGGACACUCUGUACGGAGUUACAAAGGAACGAGGUAGAUGAAGAGGUCUGGAAAGGCCCGCCAUAGGAGGUAACAGCCCUGUAGUCAAAACUUCGUUCUCUCCUGAGUGGAUCCUGAGUACGGCGGAACACGUGAAAUUCCGUCGGAAUCCGGGAGGACCAUCUCCCAAGGCUAAAUACUCCCUAGUGACCGAUAGUGAACCAGUACCGUGAGGGAAAGGUGAAAAGCACCCCGGAAGGGGAGUGAAAGAGAUCCUGAAACCGUGUGCCUACAAGUAGUCAGAGCCCGUUAACGGGUGAUGGCGUGCCUUUUGUAGAAUGAACCGGCGAGUUACGAUCCCGUGCAAGGUUAAGCAGAAGAUGCGGAGCCGCAGCGAAAGCGAGUCUGAAUAGGGCGCAUGAGUACGUGGUCGUAGACCCGAAACCAGGUGAUCUACCCAUGUCCAGGGUGAAGUUCAGGUAACACUGAAUGGAGGCCCGAACCCACGCACGUUGAAAAGUGCGGGGAUGAGGUGUGGGUAGGGGUGAAAUGCCAAUCGAACCUGGAGAUAGCUGGUUCUCUCCGAAAUAGCUUUAGGGCUAGCCUCAAGGUAAGAGUCUUGGAGGUAGAGCACUGAUUGGACUAGGGGCCCCUACCGGGUUACCGAAUUCAGUCAAACUCCGAAUGCCAAUGACUUAUCCUUGGGAGUCAGACUGCGAGUGAUAAGAUCCGUAGUCGAAAGGGAAACAGCCCAGACCGCCAGCUAAGGUCCCAAAGUAUACGUUAAGUGGAAAAGGAUGUGGAGUUGCUUAGACAACCAGGAUGUUGGCUUAGAAGCAGCCACCAUUUAAAGAGUGCGUAAUAGCUCACUGGUCGAGUGACUCUGCGCCGAAAAUGUACCGGGGCUAAACGUAUCACCGAAGCUGCGGACUGUUCUUCGAACAGUGGUAGGAGAGCGUUCUAAGGGCUGUGAAGCCAGACCGGAAGGACUGGUGGAGCGCUUAGAAGUGAGAAUGCCGGUAUGAGUAGCGAAAGAGGGGUGAGAAUCCCCUCCACCGAAUGCCUAAGGUUUCCUGAGGAAGGCUCGUCCGCUCAGGGUUAGUCGGGACCUAAGCCGAGGCCGAAAGGCGUAGGCGAUGGACAACAGGUUGAUAUUCCUGUACCACCUCCUCACCAUUUGAGCAAUGGGGGGACGCAGGAGGAUAGGGUAAGCGCGGUAUUGGAUAUCCGCGUCCAAGCAGUUAGGCUGGGAAAUAGGCAAAUCCGUUUCCCAUAAGGCUGAGCUGUGAUGGCGAGCGAAAUAUAGUAGCGAAGUUCCUGAUUCCACACUGCCAAGAAAAGCCUCUAGCGAGGUGAGAGGUGCCCGUACCGCAAACCGACACAGGUAGGCGAGGAGAGAAUCCUAAGGUGAUCGAGAGAACUCUCGUUAAGGAACUCGGCAAAAUGACCCCGUAACUUCGGGAGAAGGGGUGCUCUGUUAGGGUGCAAGCCCGAGAGAGCCGCAGUGAAUAGGCCCAGGCGACUGUUUAGCAAAAACACAGGUCUCUGCGAAGCCGUAAGGCGAAGUAUAGGGGCUGACGCCUGCCCGGUGCUGGAAGGUUAAGAGGAGCGCUUAGCGUAAGCGAAGGUGCGAAUUGAAGcCCCAGUAAACGGCGGCCGUAACUAUAACGGUCCUAAGGUAGCGAAAUUCCUUGUCGGGUAAGUUCCGACCCGCACGAAAGGCGCAACGAUCUGGGCACUGUCUCAACGAGAGACUCGGUGAAAUUAUAGUACCUGUGAAGAUGCAGGUUACCCGCGACAGGACGGAAAGACCCCGUGGAGCUUUACUGCAGCCUGAUAUUGAAUGUUGGUACAGCUUGUACAGGAUAGGUAGGAGCCUUGGAAACCGGAGCGCCAGCUUCGGUGGAGGCAUCGGUGGGAUACUACCCUGGCUGUAUUGACCUUCUAACCCGCCGCCCUUAUCGGGCGGGGAGACAGUGUCAGGUGGGCAGUUUGACUGGGGCGGUCGCCUCCUAAAAGGUAACGGAGGCGCCCAAAGGUUCCCUCAGAAUGGUUGGAAAUCAUUCGCAGAGUGUAAAGGCACAAGGGAGCUUGACUGCGAGACCUACAAGUCGAGCAGGGACGAAAGUCGGGCUUAGUGAUCCGGUGGUUCCGCAUGGAAGGGCCAUCGCUCAACGGAUAAAAGCUACCCCGGGGAUAACAGGCUUAUCUCCCCCAAGAGUCCACAUCGACGGGGAGGUUUGGCACCUCGAUGUCGGCUCAUCGCAUCCUGGGGCUGUAGUCAGUCCCAAGGGUUGGGCUGUUCGCCCAUUAAAGCGGUACGCGAGCUGGGUUCAGAACGUCGUGAGACAGUUCGGUCCCUAUCCGUCGCGGGCGCAGGAAAUUUGAGAGGAGCUGUCCUUAGUACGAGAGGACCGGGAUGGACGCACCGCUGGUGUACCAGUUGUUCUGCCAAGGGCAUCGCUGGGUAGCUAUGUGCGGACGGGAUAAGUGCUGAAAGCAUCUAAGCAUGAAGCCCCCCUCAAGAUGAGAUUUCCCAUUCCGCAAGGAAGUAAGAUCCCUGAAAGAUGAUCAGGUUGAUAGGUCUGAGGUGGAAGUGUGGCGACACAUGGAGCUGACAGAUACUAAUCGAUCGAGGACUUAACCA
.(((((((......((.((((.((.....(((.((..(((.(.(.(.......(..(((..[.....)))....(((((((...((.....]...))......)))))).)...)....(........)((..(((......)))..))....((((((.........))))))......)....((((((.........[.........))))).).........((....))....(((......((.]...)).....)))....(.((...((((((((....))))))))....[.(((...((....................(...(((.(((...(.(.(........).))..(...).(((.......)))...)))...)))....)........)).....))))....((((.((...........)).))))....].(((((..[[[[)))))..).).......)..).)))...).).............((....))....))......(..((((....))))............)).....)).)))).)).....(.(((....(((......)))....))).{.(............).((((((....(((((((.((((...((....(((.....)))....))...((....))..((((.....)))).......)))).)))))))..((.....((((((.......((((((((.((((...((..(........)..))...).)))...(((.(...(.......<)...))))..).)))))))...(..((.....))....)..))))))........))..((((((....((.((....)).))(...(((((......(.((((.(...(((...((((((((.(....(...........)....)..))))))))..)).)...).)))).)......)))))....)..(((((((.(........).)))))))....(((......)))....(.(.(.....((([[....(.(.((((.....(.....(...(((((((((...........(..................................................).......)))))))))..)............]].)...)))).))))).....)).)...((((.....))))......))))))(.(((((...((.......(((............)))....))...)))))..).....))))))(......((....((((((.......))))))((((....(((...((..(.....(...((.....)).)..........[((((.(....(.(...(((....)))...).)....)....(((..........))).].(.(...(((.(............((((....((((..((...(((.(..(..................).(((...(..(..(.((....((.(.......)))....).....).)..)...)..)))......(.......)........))))....))...))))(..).....)))).......).)))..).))))).))).....((......))..))).((((.....))))..))))..((((....(((((.(..((..(..............(((....(....).....)))..(((.(..(...((....))..)..).)))(...).......(.(((((((...(...........)...(((((((.....(.(....).).......)))))))...(((.(....(((((((..-------------------------------------------..)))))..))..).((((.........)))).........((..........(((.(.......).)))..)..)....)))....)).))))).)....)))..).))))).)))))).....))[[..((((......}]].))))..((((((((.(((.........((((.((((((..(((.(.(...(((((.(((.(.(.(.(......(...........(....((.......(..(..(.......).)..)....))..............)...).....).).).).)))....(..((((((.....)))))).).....)))))...)..).)))..(((.......)))(.((((...........)))).)([((....((.(((...((.((.........)).)).......][.[[[......))).))....((((..(..........)..)))).(........).))]]].].....(((((.(.((..]]]]..))).))))).....).......))))..))))))........(((.(.((((((...((.......))...))))))...))))..........(((..(((((....(((((.(........).)))..))..((((.......))))......))))..)....)).).....((((.((....))..))))..>.....)))))))))))[.....(((((...((((..((((((......(....).....)))))).(.(.....((((...((((.((((((....))))))...))))...))))...).)...(((.(..((((.............))))...)))).))))..]....)))))....................((..(.(.(.......).).).....((((((....(....(((((....)))))...).....)))).))......))....)))))))..
>strand_B
uUUGGUGGCGAUAGCGAAGAGGUCACACCCGUUCCCAUACCGAACACGGAAGUUAAGCUCUUCAGCGCCGAUGGUAGUCGGGGGUUUCCCCCUGUGAGAGUAGGACGCCGCCAAGCAAG
((((((.(.....((((((((.......(((...............)))........)))))).)).((.......((.(((((...))))).)).......))...).))))))....