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Institute of Computing Science
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Polish Academy of Sciences
Sequence & secondary structure in dot-bracket notation
PDB id
NDB id
Strands
Number of models
Functional class
Experimental method
Resolution [Å]
PDB deposition
3J4Y
A, 1, 2, 3
1
RIBOSOME
Electron Microscopy
17
2013-10-14
model 1
>strand_A
AAUuGAAGAGUUUGAUCAUGGCUCAGAUUGAACGCUGGCGGCAGGCCUAACACAUGCAAGUCGAACGGUAACAGGAAGAAGCUUGCUUCUUUGCUGACGAGUGGCGGACGGGUGAGUAAUGUCUGGGAAACUGCCUGAUGGAGGGGGAUAACUACUGGAAACGGUAGCUAAUACCGCAUAACGUCGCAAGACCAAAGAGGGGGACCUUCGGGCCUCUUGCCAUCGGAUGUGCCCAGAUGGGAUUAGCUAGUAGGUGGGGUAACGGCUCACCUAGGCGACGAUCCCUAGCUGGUCUGAGAGGAUGACCAGCCACACUGGAACUGAGACACGGUCCAGACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGCACAAUGGGCGCAAGCCUGAUGCAGCCAUGCCGCGUGUAUGAAGAAGGCCUUCGGGUUGUAAAGUACUUUCAGCGGGGAGGAAGGGAGUAAAGUUAAUACCUUUGCUCAUUGACGUUACCCGCAGAAGAAGCACCGGCUAACUCCGUGCCAGCAGCCGCGGUAAUACGGAGGGUGCAAGCGUUAAUCGGAAUUACUGGGCGUAAAGCGCACGCAGGCGGUUUGUUAAGUCAGAUGUGAAAUCCCCGGGCUCAACCUGGGAACUGCAUCUGAUACUGGCAAGCUUGAGUCUCGUAGAGGGGGGUAGAAUUCCAGGUGUAGCGGUGAAAUGCGUAGAGAUCUGGAGGAAUACCGGUGGCGAAGGCGGCCCCCUGGACGAAGACUGACGCUCAGGUGCGAAAGCGUGGGGAGCAAACAGGAUUAGAUACCCUGGUAGUCCACGCCGUAAACGAUGUCGACUUGGAGGUUGUGCCCUUGAGGCGUGGCUUCCGGAGCUAACGCGUUAAGUCGACCGCCUGGGGAGUACGGCCGCAAGGUUAAAACUCAAAUGAAUUGACGGGGGCCCGCACAAGCGGUGGAGCAUGUGGUUUAAUUCGAUGCAACGCGAAGAACCUUACCUGGUCUUGACAUCCACGGAAGUUUUCAGAGAUGAGAAUGUGCCUUCGGGAACCGUGAGACAGGUGCUGCAUGGCUGUCGUCAGCUCGUGUUGUGAAAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCUUAUCCUUUGUUGCCAGCGGUCCGGCCGGGAACUCAAAGGAGACUGCCAGUGAUAAACUGGAGGAAGGUGGGGAUGACGUCAAGUCAUCAUGGCCCUUACGACCAGGGCUACACACGUGCUACAAUGGCGCAUACAAAGAGAAGCGACCUCGCGAGAGCAAGCGGACCUCAUAAAGUGCGUCGUAGUCCGGAUUGGAGUCUGCAACUCGACUCCAUGAAGUCGGAAUCGCUAGUAAUCGUGGAUCAGAAUGCCACGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCACACCAUGGGAGUGGGUUGCAAAAGAAGUAGGUAGCUUAACCUUCGGGAGGGCGCUUACCACUUUGUGAUUCAUGACUGGGGUGAAGUCGUAACAAGGUAACCGUAGGGGAACCUGCGGUUGGAUCA
---.....[[.....(((...]]..((.(.(((((..((((.((((....(((.(((..(((..((.((..((((((((((....))))))).)))))..)))))......(((......(((((((..(....(((((((.(.((.....(((.((....)).)))......)).).....(.(....).)....(((((....(....)..))))).)))))))...).)))))))(......(((..((((((((.......)))))))))))........)..(((.((((....))))....)))))).(((((............))))).(((......)))...)))))).).....(.(((....((((....))))..)))).)).).))))..((((......((((....)))).....))))...(.(((((..(....(((((.(..........)..)))).)......).)))))....)..((((([[[...(((((.....((.]]])).......))))))))))..)))))).))..........((([[...(.((((...(((.(((((((.((((((((((......((((((.....))))))....))))))))..)))))))))..(((((((((...(((((((.(...(((((((...((........))......)))))))....).......((....)).)))))))..)))).))))..))))...))))....((((((...((...((.(.........).))...))))))))......{...((((((..(((.((((((((.....)))))))).)))...(...]].).....)))))))))).(((......((((....))))....)))...)))..((....(((((((.((...((((..((((((((.(......((........))..........(((((((..(.....(((((..(((((((....)))))))...((....))..)))))...).((.((....((((((.(....(((((((((....)))...(((......)))...)))))).....((((.(((((((...((..(((.....)))))....)))))))..(...((((.....))))......)..)))).....).).)))...))..))))....)))))))...)..)))))))).(....((((((.....(((..((...(((....)))...))....))).....)))))).......(....(((((((........)))))))....)..)..))))......(((((((.........)))))))......))...)))))))....))..(.(..((.(.((((.(((..((((((((((......(((.((.((....((....))...)))).))).....))))))))))..))).))))..).))...)..)..(((((((((....)))))))))}.....
>strand_1
gGGUGAuUAGCUCAGCUGGGAGAGCACCUCCCUuACaAGGAGGGGgUCGGCGGuuCGAUCCCGUCAUCACCCACCA
(((((((..((((.....[..)))).(((((....{..))))).....(((((..]....))))))))))))....
>strand_2
aCUAUGGUUUUUAUU
......}........
>strand_3
cGCGGGGuGGAGCAGCCUGGuAGCUCGUCGGGcUCAUAACCCGAAGGUCGUCGGuuCAAAUCCGGCCCCCGCAACCA
.((((((..((((......[..))))..((((.......))))......(((((..]....))))))))))).....
