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Institute of Computing Science
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Polish Academy of Sciences
Sequence & secondary structure in dot-bracket notation
PDB id
NDB id
Strands
Number of models
Functional class
Experimental method
Resolution [Å]
PDB deposition
3J53
A, 1, 2, 3
1
RIBOSOME
Electron Microscopy
13
2013-10-14
model 1
>strand_A
AAUuGAAGAGUUUGAUCAUGGCUCAGAUUGAACGCUGGCGGCAGGCCUAACACAUGCAAGUCGAACGGUAACAGGAAGAAGCUUGCUUCUUUGCUGACGAGUGGCGGACGGGUGAGUAAUGUCUGGGAAACUGCCUGAUGGAGGGGGAUAACUACUGGAAACGGUAGCUAAUACCGCAUAACGUCGCAAGACCAAAGAGGGGGACCUUCGGGCCUCUUGCCAUCGGAUGUGCCCAGAUGGGAUUAGCUAGUAGGUGGGGUAACGGCUCACCUAGGCGACGAUCCCUAGCUGGUCUGAGAGGAUGACCAGCCACACUGGAACUGAGACACGGUCCAGACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGCACAAUGGGCGCAAGCCUGAUGCAGCCAUGCCGCGUGUAUGAAGAAGGCCUUCGGGUUGUAAAGUACUUUCAGCGGGGAGGAAGGGAGUAAAGUUAAUACCUUUGCUCAUUGACGUUACCCGCAGAAGAAGCACCGGCUAACUCCGUGCCAGCAGCCGCGGUAAUACGGAGGGUGCAAGCGUUAAUCGGAAUUACUGGGCGUAAAGCGCACGCAGGCGGUUUGUUAAGUCAGAUGUGAAAUCCCCGGGCUCAACCUGGGAACUGCAUCUGAUACUGGCAAGCUUGAGUCUCGUAGAGGGGGGUAGAAUUCCAGGUGUAGCGGUGAAAUGCGUAGAGAUCUGGAGGAAUACCGGUGGCGAAGGCGGCCCCCUGGACGAAGACUGACGCUCAGGUGCGAAAGCGUGGGGAGCAAACAGGAUUAGAUACCCUGGUAGUCCACGCCGUAAACGAUGUCGACUUGGAGGUUGUGCCCUUGAGGCGUGGCUUCCGGAGCUAACGCGUUAAGUCGACCGCCUGGGGAGUACGGCCGCAAGGUUAAAACUCAAAUGAAUUGACGGGGGCCCGCACAAGCGGUGGAGCAUGUGGUUUAAUUCGAUGCAACGCGAAGAACCUUACCUGGUCUUGACAUCCACGGAAGUUUUCAGAGAUGAGAAUGUGCCUUCGGGAACCGUGAGACAGGUGCUGCAUGGCUGUCGUCAGCUCGUGUUGUGAAAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCUUAUCCUUUGUUGCCAGCGGUCCGGCCGGGAACUCAAAGGAGACUGCCAGUGAUAAACUGGAGGAAGGUGGGGAUGACGUCAAGUCAUCAUGGCCCUUACGACCAGGGCUACACACGUGCUACAAUGGCGCAUACAAAGAGAAGCGACCUCGCGAGAGCAAGCGGACCUCAUAAAGUGCGUCGUAGUCCGGAUUGGAGUCUGCAACUCGACUCCAUGAAGUCGGAAUCGCUAGUAAUCGUGGAUCAGAAUGCCACGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCACACCAUGGGAGUGGGUUGCAAAAGAAGUAGGUAGCUUAACCUUCGGGAGGGCGCUUACCACUUUGUGAUUCAUGACUGGGGUGAAGUCGUAACAAGGUAACCGUAGGGGAACCUGCGGUUGGAUCA
---....[[....(.(((....]].((((.(((((..((((((.(.....(((.(((..(((..((.((..((((((((((....))))))).)))))..)))))......(((......(((((((..((...((.((((.(.((.....(((.((....)).)))......)).).....(((....)))....(((((...(......).))))).)))).))..)).)))))))(((....(((...(((((.((......))))))).)))......)))..((((.(((....)))....))))))).(((................)))..((......))....)))))).........(((...(((((....)))).))))..)..))))))..((((......((((....)))).....))))...(.(((((...(...(((...(.(.......))....)).)...)....)))))....)..((((([[[...(((((.....((.]]])).......))))))))))..)))))))))..........((([[.....((((...(((.((((((..((((((((((......((((((.....))))))....)))))))))..).))))))..(((((.(((...((((((((....((((((....((........)).......))))))....).......((....)).)))))))..)))..))))..))))...))))....((.(((...((...((((.........))))...))))).))......{.....((((..(((.((((((((.....)))))))).)))...((..]])).....))))...))).(((......((((....))))....)))...))).)(((((.(((.(((..(..(((((..((((((((((......((........))..........((((.((..(...(.(((((..(((((((....)))))))...((....))..)))))..)).((.(((...((((.(.(....(((((((((....)))..((((......))))..)))))).....((((.(.(((((...((..(((.....)))))....))))).)..(..(((((.....))))).....)..)))).....).)..))...)).)))))....)).))))...)).)))))))).(...(((((((.....(((..((...(((....)))...))....))).....)))))))......(.....((((((........)))))).....)..)..))))).....(((((((.........)))))))......)....))).)))))).))..(.(..((.(.((((..((..((((.((((.........((((.(((...((....))..)))))))........)))).))))..))..))))..).))...)..)..(((((((((....)))))))))}.....
>strand_1
gGGUGAuUAGCUCAGCUGGGAGAGCACCUCCCUuACaAGGAGGGGgUCGGCGGuuCGAUCCCGUCAUCACCCACCA
(((((((..((((........)))).(((((...[[..))))).....(((((.......))))))))))))....
>strand_2
aCUAUGGUUUUUAUU
....{{]].......
>strand_3
cGCGGGGuGGAGCAGCCUGGuAGCUCGUCGGGcUCAUAACCCGAAGGUCGUCGGuuCAAAUCCGGCCCCCGCAACCA
.((((((..((((......[..)))).((((...}}....)))).....(((((..]....))))))))))).....