You are 4034896 visitor.
Currently 9 users online.


Sequence & secondary structure in dot-bracket notation
       
 PDB id   NDB id  Strands     Number of models     Functional class     Experimental method     Resolution [Å]     PDB deposition
3JYX 3, 4, 51RIBOSOMEElectron Microscopy8.92009-09-22


model 1
>strand_3
gGUUGCGGCCAUAUCUACCAGAAAGCACCGUUUCCCGUCCGAUCAACUGUGUUAAGCUGUAGAGCCGACAGUAGUGUAGGGUGACCAUACGCGAAACUCAGGUGCUGCAAUCU
(((((((......((..........(.........(....).........)..........)).(.........(..(..(...)..)..).........)....))))))).
>strand_4
aAACUUUCAACAACGGAUCUCUUGGUUCUCGCAUCGAUGAAGAACGCAGCGAAAUGCGAUACGUAAUGUAGGUUGCAGAAUUCCGUGAAUCAUCGAUCUUUGAACGCACAUUGCGCCCCUUGGUAUUCCAGGGGGCAUGCCUGUUUGAGCGUCAUUU
....(((((.........(......(..((((.((.......(.(((........))).......(..........................)......)................(((((((....)))))))....(..((((..(........(
>strand_5
gUUUGACCUCAAACAGGUAGGAGUACCCGCUGAACUUAAGCAUAUCAAUAAGCGGAGGAAAAGAAACCAACCGGGAUUGCCUUAGUAACGGCGAGUGAAGCGGCAAAAGCUCAAAUUUGAAAUCUGGUACCUUCGGUGCCCGAGUUGUAAUUUGGAGAGGGCAACUUUGGGGCCGUUCCUUGUCUAUGUCCUUGGAACAGGACGUCAUAGGGGGUGAGAAUCCCGUGUGCGAGGAGUGCGGUUCUUUGUAAAGUGCCUUCGAAGAGUCGAGUUGUUUGGGAAUGCAGCUCUAAGUGGGUGGAAAUUCAUCUAAAGCUAAAUAUUGGCGAGAGACCGAUAGCGAACAAGUACAGUGAUGGAAAGAUGAAAAGAACUUUGAAAAGAGAGUGAAAAAGUACGUGAAAUUGUUGAAAGGGAAGGGCAUUUGAUCACAUGGUGUUUUGUGCCCUCUGCUCCUUGUGGGUAGGGGAAUCUCGCAUUUCACUGGGCCAGCAUCAGUUUUGGUGGCAGGAUAAACCCAUAGGAAUGUAGCUUGCCUCGGUAAGUAUUAUAGCCUGUGGGAAUACUGCCAGCUGGGACUGAGUGAAAUGACGUAAGUCAAGGAUGCUGGCAUAAUGGUUAUAUGCCGCCCGUCUUGAAACACGGACCAAGGAGUCUAACGUCUAUGCGAGUGUUUGGGUAAACCAUACGCGUAAUGAAAGUGAGCGUAGGUUGGGGCCUCGCAAGAGGUGCACAAUCGACCGAUCCUGAUGUCUUCGGAUGGAUUUGAGUAAGAGCAUAGCUGUUGGGACCCGAAAGAUGGUGAACUAUGCCUGAAUAGGGUGAAGCCAGAGGAAACUCUGGUGGAGGCUCGUAGCGGUUUGACGUGCAAAUCGAUCGUCGAAUUUGGGUAUAGGGGCGAAAGACUAAUCGAACCAUCUAGUAGCUGGUUCCUGCCGAAGUUUCCCUCAGGAUAGCACGAAGCUCGUUUUAUGAGGUAAGCAAUGAUUAGAGGUCGGGGUCGAAAGACCUUGACCUAUUCUCAAACUUUAAAUAUGUAAGAAGUCCUUGUUACUUAAUUGAACGUGGACAUUUGAAUGAGAGCUUUUAGUGGGCCAUUUUUGGUAAGCAGAACUGGCGAUGCGGGAUGAACCGAACGUAGAGUUAAGGUGCCGGAAUACACGCUCAUCAACAAAAGGUGUUAGUUCAUCUAGACAGCCGGACGGUGGCCAUGGAAGUCGGAAUCCGCUAAGGAGUGUGUAACAACUCACCGGCCGAAUGAACUAGCCCUGAAAAUGGAUGGCGCCAAGCGUGUUACCUAUACUCUACCGUCAGGGUGCCCUGACGAGUAGGCAGGCGUGGAGGUCGUGACGAAGCCUGACCGUAAGGUCGGGUCGAACGGCCUCUAGUGCAGAUCUUGGUGGUAGUAGCAAAUAUUCAAAUGAGAACUUUGAAGACUGAAGGGGGAAAGGUUCCACGUCAACAGCAGUUGGACGUGGGUUAGUCGAUCCUAAGAGAUGGGGAAGCUCCGUUUCAAAGGCCUGAUUUUAUGCAGGCCACCAUCGAAGGGAAUCCGGUUAAGAUUCCGGAACCUGGUGGUUCUUCACGGUAACGUAACUGAAUGUGGAGACGUCGCGAGCCCUGGGAGGAGUUAUCUUUUCUUCUUAACAGCUUAUCACCCGAAUUGGUUUAUCCGGAAUGGGGUCUUAUGGCUGGAAGAGGCCAGCACCUUUGCUGGCUCCGGUGCGCUUGACGGCCGUGAAAAUCCACAGGAAGGAAUAGUUUUCAUGCCAGGUCGUACUGAUAACCGCAGCAGGUCUCCAAGGUGAACAGCCUCUAGUUGAUAGAAUAAUGUGAUAAGGGAAGUCGGCAAAAUAGAUCCGUAACUUCGGGAUAAGGAUUGGCUCUAAGUUAGAACUGGUACGGACAAGGGGAAUCUGACUGUCUAAUUAAAACAUAGCAUUGCGAUGGUCAAAAGUGAUGUUGACGCAAUGUGAUUUCUGCCCAGUGCUCGAAUGUCAAAGUGAAGAAAUUCAACCAAGCGCGGGUAAACGGCGGGAGUAACUAUGACUCUCUUAAGGUAGCCAAAUGCCUCGUCAUCUAAUUAGUGACGCGCAUGAAUGGAUUAACGAGAUUCCCACUGUCCCUAUCUACUAUCUAGCGAAACCACAGCCAAGGGAACGGGCUUGGCAGAAUCAGCGGGGAAAGAAGACCCUGUUGAGCUUGACUCUAGUUUGACAUUGUGAAGAGACAUAGAGGGUGUAGAAUAAGUGGGAGCUUCGGCGCCAGUGAAAUACCACUACCUUUAUGUUUCUUUACUUAUUCAAUGAAGCGGAGCUGGAAUUAAUUUUCCACAUCCUUGUGUAUAGGGUCCCAUUCGGGGCUGAUCCGGGUUGAAGACAUUGUCAGGUGGGGAGUUUGGCUGGGGCGGCCAUCUGUUAAACGAUAACGCAGAUGUCCUAAGGGGGGCUCAUGGAGAACAGAAAUCUCCAGUAGAACAAAAGGGUAAAAGCCCCCUUGAUUUUGAUUUUCGUGUGAAUACAAACCAUGAAAGUGUGGCCUAUCGAUCCUUUAGCCUCGAAUUUGAGGCUAGAGGUGCCAGAAAAGUUACCACAGGGAUAACUGGCUUGUGGCAGUCAAGCGUUCAUAGCGACAUUGCUUUUUGAUUCUUCGAUGUCGGCUCUUCCUAUCAUACCGAAGCAGAAUUCGGUAAGCGUUGGAUUGUUCACCCACUAAUAGGGAACGUGAGCUGGGUUUAGACCGUCGUGAGACAGGUUAGUUUUACCCUACUGAUGAAUGUUACCGCAAUAGUAAUUGAACUUAGUACGAGAGGAACAGUUCAUUCGGAUAAUUGGUUUUUGCGGCUGUCUGAUCAGGCAUUGCCGCGAAGCUACAUCCGCUGGAUUAUGGCUGAACGCCUCUAAGUCAGAAUCCAUGCUAGAACGCGGUGAUUUCUUUGCUCCACACAAUAUGUACCUUUUGUAUAAUGGCGUCCUUGUGGCGUCUACCUUUUGUAUAAUGCUAGCAACGGUGCACUUGGCGGAAAGGCCUUGGGUGCUUGCUGGCGUGAAAUUGAACUAUUUUGCGUGGGGAAAAUCAUUUGUAUACGACUUAGAUGUACAAGGGGUAUUGUAAGCAGUAGAGUAGCCUUGUUGUUACGAUCUGCUGAGAUUACCUUUUGUCUGAUUUGU
).......)..))))..)..))...((((((...................))))).).........((....))...((((......((.....)).....))))...((((.........(...((..(.....)..))....).............((.........(...((.(((((.(....((((........))))[[(...).(((.....]])))....).)))))...))...)............)).....)....((((..............)))).....(((..........)))..))).........))))..)..................((....))............(..((.(....).))............)).........)))))......((((....((.......((.........(..(((((.....))))).)..............)).............(((..(.((...((..........((((.......(((((....)))))........))))........))....)).)..))).........(((....)))..................))....))))...(((........)))..(((.............((......(.(...((.....))...).)..................(.......((((....))))........)...(..(((.(..(....)...))))...)...........)).........((.(...((((((.....(((((((((.....(....(((..........)))....).......(....((((........))))...)....)))))))))....(.......).......))))))......).))..((((......(.(.(....).).)((..(.(........(((......((.....(........((.((((....)))).))........)....))........))).....((..(.(...........).)..))...............))...))..((((.((((.......)))).))))....(((......)))...(((((.....(((......(..((((.(..........(....(((.(((.(.....[........(.....................)..........((......))...........).))).)))...)..................))))).)))).....)))))((.(..........).))......))))(..((....(((......((((((........))))))...)))....))...).......)))........((.....((((((.......))))))..((....(..(..(...((((..(....(.....)..)..)))....[.((..(.(.....(((..(....).)))......((((((........)))))).........))...(((............))).]((....(................................(((........(...((((.........))))..(.....................(.....).........................)...((.((....)).)).....)...........)))(..)........................)......))..)).).)................)..).(..(.....)..)..)).......(.......((((.((..(............(.(((....(.[..).....))).).(.(((.....))).).(...).......(((((.(.....((.........))...((..((......(((....)))........))..)).]...(..((..((((....................................))..)))).(((((.........)))))........(.................................)....).........).)))))....))).)))).....)...))..........(((((........)))))....(((....(((.((.......(((.((...(..(...(.((((((((......((((((...(.................(......................)........)...)))))).......(((((.....((((..(((((......)))))..................(((....))).....))))..))))).....))))))))..)...)...((.......))..(((...............))).(......(((((((.(.((..(.........)..))...).......[.......)))))))....((...((........))...))................]...........((................)).......).....).....))))).........(.(...(..((....((.......))....))..)....).)..........((.(...(.((..(.(((((((......))))))..).).(((.........))).....)).).......).).)......((((((....))).))).....))..)))...)))........(........(...(((........(....).......)))...(.......(.....((..(.(.((......)).)...)..))....).....).........((.......].........))........)..........)........................................................................((((((((..(.((....................)).))))))))).................................(..(.......)..)......(..(((.................(((((......)))))................)))..)..........