Search
Structural elements
Secondary structures
Help
About
References
Links
You are
4035080
visitor.
Currently
10
users online.
Supported by:
Institute of Computing Science
,
Poznan University of Technology
Institute of Bioorganic Chemistry
,
Polish Academy of Sciences
Sequence & secondary structure in dot-bracket notation
PDB id
NDB id
Strands
Number of models
Functional class
Experimental method
Resolution [Å]
PDB deposition
3KNL
NA0406
A, V, W, X, Y
1
RIBOSOME/ANTIBIOTIC
X-Ray Difraction
3.45
2009-11-12
model 1
>strand_A
UUGUuGGAGAGUUUGAUCCUGGCUCAGGGUGAACGCUGGCGGCGUGCCUAAGACAUGCAAGUCGUGCGGGCCGCGGGGUUUUACUCCGUGGUCAGCGGCGGACGGGUGAGUAACGCGUGGGUGACCUACCCGGAAGAGGGGGACAACCCGGGGAAACUCGGGCUAAUCCCCCAUGUGGACCCGCCCCUUGGGGUGUGUCCAAAGGGCUUUGCCCGCUUCCGGAUGGGCCCGCGUCCCAUCAGCUAGUUGGUGGGGUAAUGGCCCACCAAGGCGACGACGGGUAGCCGGUCUGAGAGGAUGGCCGGCCACAGGGGCACUGAGACACGGGCCCCACUCCUACGGGAGGCAGCAGUUAGGAAUCUUCCGCAAUGGGCGCAAGCCUGACGGAGCGACGCCGCUUGGAGGAAGAAGCCCUUCGGGGUGUAAACUCCUGAACCCGGGACGAAACCCCCGACGAGGGGACUGACGGUACCGGGGUAAUAGCGCCGGCCAACUCCGUGCCAGCAGCCGCGGUAAUACGGAGGGCGCGAGCGUUACCCGGAUUCACUGGGCGUAAAGGGCGUGUAGGCGGCCUGGGGCGUCCCAUGUGAAAGACCACGGCUCAACCGUGGGGGAGCGUGGGAUACGCUCAGGCUAGACGGUGGGAGAGGGUGGUGGAAUUCCCGGAGUAGCGGUGAAAUGCGCAGAUACCGGGAGGAACGCCGAUGGCGAAGGCAGCCACCUGGUCCACCCGUGACGCUGAGGCGCGAAAGCGUGGGGAGCAAACCGGAUUAGAUACCCGGGUAGUCCACGCCCUAAACGAUGCGCGCUAGGUCUCUGGGUCUCCUGGGGGCCGAAGCUAACGCGUUAAGCGCGCCGCCUGGGGAGUACGGCCGCAAGGCUGAAACUCAAAGGAAUUGACGGGGGCCCGCACAAGCGGUGGAGCAUGUGGUUUAAUUCGAAGCAACGCGAAGAACCUUACCAGGCCUUGACAUGCUAGGGAACCCGGGUGAAAGCCUGGGGUGCCCCGCGAGGGGAGCCCUAGCACAGGUGCUGCAUGGCCGUCGUCAGCUCGUGCCGUGAGGUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCCCGCCGUUAGUUGCCAGCGGUUCGGCCGGGCACUCUAACGGGACUGCCCGCGAAAGCGGGAGGAAGGAGGGGACGACGUCUGGUCAGCAUGGCCCUUACGGCCUGGGCGACACACGUGCUACAAUGCCCACUACAAAGCGAUGCCACCCGGCAACGGGGAGCUAAUCGCAAAAAGGUGGGCCCAGUUCGGAUUGGGGUCUGCAACCCGACCCCAUGAAGCCGGAAUCGCUAGUAAUCGCGGAUCAGCCAUGCCGCGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCACGCCAUGGGAGCGGGCUCUACCCGAAGUCGCCGGGAGCCUACGGGCAGGCGCCGAGGGUAGGGCCCGUGACUGGGGCGAAGUCGUAACAAGGUAGCUGUACCGGAAGGUGCGGCUGGA
----....((((..[.[[[..)))).((((.(((((..(((((((((....(((.(((..(((..((.(((((...............))))).)))))......(((......((((((((..((...(((((((.(((((....(((((......))))).....)))))....((((..(((......)))..))))...((((...)))).)))))))..))))))))))(((....(((..(((((((.........))))))))))......)))..((((((((....))))...))))))).(((((............))))).((((....))))...)))))).).....(.(((...(((.(....).)).))))).)).))))))...((.......((((....))))......)).....(((((...(.....(((.....)))......)....)))))......((((([[[...(((((.....((.]]])).......))))))))))..)))))))))..........((([[...(.((((...(((.(.(((((.((((((((((.......(((((.....))))).....))))))))..))))))).)..(((.(((((...((((((((...(((((((....((........)).......)))))))...).......((....)).)))))))..)))))..))..))))...))))....((((((...((...((((.........))))...))))))))......{...((((((..(((((((((.....)))))))))...((..]])).....)))))))))).(((......((((....))))....)))...]]].](.(((.(((((((.((..(((((...(((((((((......((........))...........(...((..(...((.(........((.((....)).)).......---------........))))....(((...((((((.(....(((((((.(....).)...(((......)))...)))))).....((((.((((((....(..............)......)))))).....(.(........).)........)))).....).).)))...)).)))......))...)....)).)))))))..(...(((((((.....(((...(..((........))..).....))).....)))))))......(....(((((((........)))))))....)..)..)))))......(((.((..........)).))).......))...))))))))))..)..(.(..((.(.((((..((..(((((((((((((...(.((((.....(.(...))..)))).)..)))))))))))))..))..))))..).))...)..)....(((((((....)))))))..}..
>strand_V
AAAAAGGAAAUAaAAAUGCAGUCAAUCUA
------------...[[[.[[--------
>strand_W
UGGGGUAUCGCCAAGCGGUAAGGCACCGGAUUCUGAUUCCGGCAUUCCGAGGUUCGAAUCCUCGUACCCCAGCCA
-((((((...(...........)..((((...]]....)))).....(((((.......))))))))))).....
>strand_X
cGCGGGGUGGAGCAGCCUGGUAGCUCGUCGGGCUCAUAACCCGAAGAUCGUCGGUUCAAAUCCGGCCCCCGCAACCA
.((((((..((((.........)))).(((((..]]]..))))).....(((((.......))))))))))).....
>strand_Y
uGGGGUAUCGCCAAGCGGUAAGGCACCGGAUUGUGAUUCCGGCUUUCCGAGGUUCGAAUCCUCGUACCCCAGCCA
.(((.(.....(.........)...(((...........))).......((.........))...).))).....
