RNA FRABASE - RNA FRAgments search engine & dataBASE

Sequence & secondary structure in dot-bracket notation

PDB id	NDB id	Strands	Number of models	Functional class	Experimental method	Resolution [Å]	PDB deposition
3OFQ	NA0673	A, B	1	RIBOSOME	X-Ray Difraction	3.1	2010-08-15

model 1

>strand_A
gGUUAAGCGACUAAGCGUACACGGUGGAUGCCCUGGCAGUCAGAGGCGAUGAAGGACGUGCUAAUCUGCGAUAAGCGUCGGUAAGGUGAUAUGAACCGUUAUAACCGGCGAUUUCCGAAUGGGGAAACCCAGUGUGUUUCGACACACUAUCAUUAACUGAAUCCAUAGGUUAAUGAGGCGAACCGGGGGAACUGAAACAUCUAAGUACCCCGAGGAAAAGAAAUCAACCGAGAUUCCCCCAGUAGCGGCGAGCGAACGGGGAGCAGCCCAGAGCCUGAAUCAGUGUGUGUGUUAGUGGAAGCGUCUGGAAAGGCGCGCGAUACAGGGUGACAGCCCCGUACACAAAAAUGCACAUGCUGUGAGCUCGAUGAGUAGGGCGGGACACGUGGUAUCCUGUCUGAAUAUGGGGGGACCAUCCUCCAAGGCUAAAUACUCCUGACUGACCGAUAGUGAACCAGUACCGUGAGGGAAAGGCGAAAAGAACCCCGGCGAGGGGAGUGAAAAAGAACCUGAAACCGUGUACGUACAAGCAGUGGGAGCACGCUUAGGCGUGUGACUGCGUACCUUUUGUAUAAUGGGUCAGCGACUUAUAUUCUGUAGCAAGGUUAACCGAAUAGGGGAGCCGAAGGGAAACCGAGUCUUAACUGGGCGUUAAGUUGCAGGGUAUAGACCCGAAACCCGGUGAUCUAGCCAUGGGCAGGUUGAAGGUUGGGUAACACUAACUGGAGGACCGAACCGACUAAUGUUGAAAAAUUAGCGGAUGACUUGUGGCUGGGGGUGAAAGGCCAAUCAAACCGGGAGAUAGCUGGUUCUCCCCGAAAGCUAUUUAGGUAGCGCCUCGUGAAUUCAUCUCCGGGGGUAGAGCACUGUUUCGGCAAGGGGGUCAUCCCGACUUACCAACCCGAUGCAAACUGCGAAUACCGGAGAAUGUUAUCACGGGAGACACACGGCGGGUGCUAACGUCCGUCGUGAAGAGGGAAACAACCCAGACCGCCAGCUAAGGUCCCAAAGUCAUGGUUAAGUGGGAAACGAUGUGGGAAGGCCCAGACAGCCAGGAUGUUGGCUUAGAAGCAGCCAUCAUUUAAAGAAAGCGUAAUAGCUCACUGGUCGAGUCGGCCUGCGCGGAAGAUGUAACGGGGCUAAACCAUGCACCGAAGCUGCGGCAGCGACGCUUAUGCGUUGUUGGGUAGGGGAGCGUUCUGUAAGCCUGCGAAGGUGUGCUGUGAGGCAUGCUGGAGGUAUCAGAAGUGCGAAUGCUGACAUAAGUAACGAUAAAGCGGGUGAAAAGCCCGCUCGCCGGAAGACCAAGGGUUCCUGUCCAACGUUAAUCGGGGCAGGGUGAGUCGACCCCUAAGGCGAGGCCGAAAGGCGUAGUCGAUGGGAAACAGGUUAAUAUUCCUGUACUUGGUGUUACUGCGAAGGGGGGACGGAGAAGGCUAUGUUGGCCGGGCGACGGUUGUCCCGGUUUAAGCGUGUAGGCUGGUUUUCCAGGCAAAUCCGGAAAAUCAAGGCUGAGGCGUGAUGACGAGGCACUACGGUGCUGAAGCAACAAAUGCCCUGCUUCCAGGAAAAGCCUCUAAGCAUCAGGUAACAUCAAAUCGUACCCCAAACCGACACAGGUGGUCAGGUAGAGAAUACCAAGGCGCUUGAGAGAACUCGGGUGAAGGAACUAGGCAAAAUGGUGCCGUAACUUCGGGAGAAGGCACGCUGAUAUGUAGGUGAGGUCCCUCGCGGAUGGAGCUGAAAUCAGUCGAAGAUACCAGCUGGCUGCAACUGUUUAUUAAAAACACAGCACUGUGCAAACACGAAAGUGGACGUAUACGGUGUGACGCCUGCCCGGUGCCGGAAGGUUAAUUGAUGGGGUUAGCGCAAGCGAAGCUCUUGAUCGAAGCCCCGGUAAACGGCGGCCGUAACUAUAACGGUCCUAAGGUAGCGAAAUUCCUUGUCGGGUAAGUUCCGACCUGCACGAAUGGCGUAAUGAUGGCCAGGCUGUCUCCACCCGAGACUCAGUGAAAUUGAACUCGCUGUGAAGAUGCAGUGUACCCGCGGCAAGACGGAAAGACCCCGUGAACCUUUACUAUAGCUUGACACUGAACAUUGAGCCUUGAUGUGUAGGAUAGGUGGGAGGCUUUGAAGUGUGGACGCCAGUCUGCAUGGAGCCGACCUUGAAAUACCACCCUUUAAUGUUUGAUGUUCUAACGUUGACCCGUAAUCCGGGUUGCGGACAGUGUCUGGUGGGUAGUUUGACUGGGGCGGUCUCCUCCUAAAGAGUAACGGAGGAGCACGAAGGUUGGCUAAUCCUGGUCGGACAUCAGGAGGUUAGUGCAAUGGCAUAAGCCAGCUUGACUGCGAGCGUGACGGCGCGAGCAGGUGCGAAAGCAGGUCAUAGUGAUCCGGUGGUUCUGAAUGGAAGGGCCAUCGCUCAACGGAUAAAAGGUACUCCGGGGAUAACAGGCUGAUACCGCCCAAGAGUUCAUAUCGACGGCGGUGUUUGGCACCUCGAUGUCGGCUCAUCACAUCCUGGGGCUGAAGUAGGUCCCAAGGGUAUGGCUGUUCGCCAUUUAAAGUGGUACGCGAGCUGGGUUUAGAACGUCGUGAGACAGUUCGGUCCCUAUCUGCCGUGGGCGCUGGAGAACUGAGGGGGGCUGCUCCUAGUACGAGAGGACCGGAGUGGACGCAUCACUGGUGUUCGGGUUGUCAUGCCAAUGGCACUGCCCGGUAGCUAAAUGCGGAAGAGAUAAGUGCUGAAAGCAUCUAAGCACGAAACUUGCCCCGAGAUGAGUUCUCCCUGACCCUUUAAGGGUCCUGAAGGAACGUUGAAGACGACGACGUUGAUAGGCCGGGUGUGUAAGCGCAGCGAUGCGUUGAGCUAACCGGUACUAAUGAACCGUGAGGCUUAACCUU
((((((((......((((((((.(.....(((..(.(.(((..((((.......(.(((.[....[.)))......((((....(((]....].)))........)))).....).......(....)..(((.(((....))).))).(((((((((.........))))))))).)).....((.(.....(...[..)......).))............((....))....((((.....((.]...))....))))....(((..(..(......(((((((((((((.(((......(........)...[.(...).(((......])))...)))...)))))))))))))...)..)........(((...(...[.......)...)))......(((((].[[.[)))))..)))......))...))).)..)...............((....))....))......(..((((.....))))............).)....).)))))))).....(.((((..(((((......)))))..)))).[.(.(........).).((((.(....(((.((((((.((..(.(...(.......)...).)...((....))..((((.....)))).....)).)))))).)))...(.(....(((((.....((((((((((.((((...((((((......))))))...).)))...(((.(((((........))))))))..).))))))))).(.(((.....)))...)..))))).......).)...((((((....((((......))))..(((((((...(.(((((((.....(.....(((.((((...-------------------....)))).))).....).....)))))).).)...))))))).....((((((((((......))))))))))....(((......)))....(((.(((...((([[[...(.((((((.....(.....((..(((((..(((.......(((((.(((...(...........)...))).....(...((......)).).)))))...)))..))))).))...........]]].)...))))))))))...)))))).(((((((((....)))))))))....))))))(.(((((...(((......(.((((((....)))))).)...)))..)))))..).....).))))(......((.....(((((.........)))))((((....((.(..((..(.(((((...((.....)).))))).....((.[...((...(((...(((....)))...)))...))...((..(........)..))))..((((.((((.(...((((....((((..(((..(((.(((.((.....{{{....)).))((..((((...((..((((((((.(.......)))))))))....))...))))...))(..((.(......).))...)).)))...)))...))))(..).....))))...).....)))).))))....]..)))......(......)..).)).((((.....))))..))))..(((.....(((((((..((..(............(((((....(.[..).....)))))((((((.....(((...(((((..).))))...)))...))))))(...).......(((.(((((...((.........))...(((((((.......(....).........))))))).]((((.(((..(((.(((..(((........(((((..((....))...)))))........)))))).)..)))))(((((.........)))))........((..........(((.((.....)).)))..)..)....))))...)).))).)))....)))..)))))))..))))).....)).{..(((((.....]}.)))))..((((((((.(((.((......((((.((((((...((((.(((.(((((.(.((((((((...(((..----------------------...((.(((........))).))..---------------------..)))...))))))))..)..(((.((((((.....)))))))))....))))).)))..))))...(((......[))).(((((..........]))))).([((...((((...(...(((.(.......).)))......((][..[[))....)..)))).....((..((((..{.))))..))...(((....))).))]]..].....(((((((.((..].]]..))))))))).....)}......))))..))))))......(((((.((((((((...((.......))...)))))))..)))).).)......((((.((((((.....((((((......))))))......(((((.....))))).....)))))..)...))).).....(((((((....))).))))....))..)))))))))))[...(((((((...((((..((((((.(....(....)....)))))))...(((...((.(...(((((((((((}}}.))))))..)))))...).)).))).....(......(.((.............)).)......).))))..]....)))))))(.((((.......))))(....((..((((.........))))....((((((.(...(....(((((....)))))...)....).))).))).....))..).))))))))).-

>strand_B
GCCUGGCGGCCGUAGCGCGGUGGUCCCACCUGACCCCAUGCCGAACUCAGAAGUGAAACGCCGUAGCGCCGAUGGUAGUGUGGGGUCUCCCCAUGCGAGAGUAGGGAACUGCCAGGC
(((((((((.......((((((....(((.(.(...(.....)...).)...)))...))))))....((.......((((((((...)))))))).......))...)))))))))