RNA FRABASE - RNA FRAgments search engine & dataBASE

Sequence & secondary structure in dot-bracket notation

PDB id	NDB id	Strands	Number of models	Functional class	Experimental method	Resolution [Å]	PDB deposition
4A1D	NA1399	1	1	RIBOSOME	X-Ray Difraction	3.52	2011-09-14

model 1

>strand_1
cUACACCUGAAACAAGCAAGAUUACCCGCUGAACUUAAGCAUAUCAGUAAGCGGAGGAAAAGAAACUAACUAGGAUAGCCCCAGUAAUGGCGAAUGAACAGGCUAAAGCUCAAAGUGAAAAUCUGAAGUGGUCAACACAACAGAAUUGUAAUCUAAAGGGUCAACCUGAAACUAAGCUCCUCUCAUAAGUUCCUUGGAACAGGACGUCAAAGAGGGUGACAACCCCGUAGUCGGAGAGGAAGGCUGGUGUAAGGGAGAUUUCAAAGAGUCGGGUUGUUUGGGAUUGCAGCCCUAAGUGGGAGAUAAACUUCUUCUAAAGCUAAAUAUACACGGGAGACCGAUAGCGAACAAGUACUGCGAAGGAAAGAUGAAAAGAACUUUGAAAAGAGGGCUAAAAGACUUGAAACCGUUGAGAAGGAAGCUGUAGAAGAGCAAUAAACUGGACGGCGCAUAAGGGGGAAGUACUAAUCACUGCAGAGUCGAUACGUAAAAGGUCGAUGAGUAAGGAAAUGGUACAGAACUUGCUACGCCGGUCAGAAGACAAAAUGGGUUCAGAUUGAAGGAGUCACCUGAGAUCGGGCAGCAAUGCAGAUCAAAAGGAAAACUUCAAACUGGACUGAGGGGCCUAAGGGCGAUUUUGUCAAAAUGGCUUCUACUGACCCGUCUUGAAACACGGACCAAGGAGUCUAUCAAUUAAGCGAGUGAUAGGGUGGAAAAACCCGUCCGCGAAACGAAAGUGAGUACAAGGUGCCAAGCCGCAAGGUAGCAGCAUCACCCGACCUUGAGUCUCCGACGAAGGGUUCGAGGAAGAGCUUAAUUGUUAGGACCCGAAAGAUGGUGAACUACGCUUGAAUAGGGUGAAGCCAGGGGAAACUCUGGUGGAAGCUCGUAGCGAUACUGACGUGCAAAUCGUUCGUCAAAUUUGAGUGUAGGGGCGAAAGACUAAUCGAACCAUCUAGUAGCUGGUUCCCUCCGAAGUUUCUCUCAGGAUAGCAAGAGCAAGUACGCAGUUUUAUUAGGUAAAGCGAAUGAUUAGAGGACUCGGGGUUCCAAGAAUCUCGACCUAUUCUCAAACUUUAAAUUGGUAAGAGCCGCGGAGUUUACUUAAAUGAACUCUCGGGAAGAAUGCAGUGCUCUUAGUGGGCCAUUUUUGGUAAGCAGAACUGGCGAUGAGGGAUGAACCUAACGUUGAGAUAAGGCGCCCAAAUGCACGCUCAUCAGAUACCACAAAAGGUGUUGGUUCAUACGGACAGCAGGACGGUGGCUAUGGAAGUUAGAAUCCGCUAAGGAGUGUGUAACAACUCACCUGCCGAAUGAACUAGCCCUGAAAAUGGAUGGCGCUGAAGCGUGUUGCCGAUACUCAACCAUCAGAGCAAAUGCGAGGCUUUGAUGAGUAGGAGGGCGUGAUCGUUGCCUAGAAGUAUUGGGCGUGAGCCUAUAUGGAGCAGCGAUUAGUGCAGAUCUUGGUGGUAGUAGCAAAUAUUCAAAUGAGAACUUUGAAGACCGAAGUGGAGAAGGGUUCCAUGAGAACAGCAAUUGUUCAUGGGUUACUCGAUCCUAAGACAUAGGUUAACUCCUUGCAAUACAAGAAGACAUUCGUUUUCGUUGUCAAAAGGGAAUGAGGUUAAUAUUCCUCAAGCUGGACGUGGUAUAGAGCGGUAACGCAAAGAAACCCGGAGACGUCAGCAGGUGUCACUGGAAGAGUUAUCUUUUCUUUUUAACAUACUAUGGCCAUGAAAUUGGAUUAUCCAGAGAUAUCGGCUGUAUGUAUGGCAGAGCAGCUCACCCUAAGAGCUGUCAGUUGCGCACCUGAUGACCCUUGAAAAUCUGGGGGAGACAUAAUUUCACGCCAGUUCGUACCCAUAACCGCAUCAGGUCUCCAAGGUUAGCAGCCUCUGGUCCAUAGAACAAUGUAGAUAAGGGAAGUCGGCAAAUUGGAUCCGUAACUUCGGGAUAAGGAUUGGCUCUGAGGAUCGGGUAUAAAGGCUUUGUAAUGAUAUCCAAGCUUGUUUGUUAGUGUGGCAACAUGCUGAUAGACUUGCGAACGAUGAAUUUGCAAGGUAGGUUUCGGCCGUCUUUAUACAAUUAACGAUCAACUCAGAACUGAAGCGGACAAAGGUAAUCCGACUGUUUAAUAAAAACAAAGCAUUGUGACGGCCUCAACAGGUGAUGACACAAUGUGAUUUCUGCCCAGUGCUCUGAAUGUCAAAGUGACGCAAUUCAACCAAGCGCGGGUAAACGGCGGGAGUAACUAUGACUCUCUUAAGGUAGCCAAAUGCCUCGUCAUCUAAUUAGUGACGCGCAUGAAUGGAUUAAUGAGAUUACCACUGUCCCUAUCUACUAUCUAGCGAACCCACAGCUAAGGGAACGGGCUUAGAAUAAUCAGCGGGGAAAGAAGACCCUGUUGAGCUUGACUCUAGUCUAACUUUGUGAAAUGGCACGUGGGGUAUAGCCUAGGUGGGAGAGCAAUCGAUCCUGUAAAACCACUACCCACGUAGUCAUUUUGCUUAUUUCGUGAAGAAAAGACUGGUGCAAACCAGUUCUAAAGUUAAGGUCAUUUAUUGACUGAUUUUUGCGAAAGACAUGGUUAGGGGGGGAGUUUGUCUGGGGCGGAAUGCCUGUUAAACCAUAACGCAGGCGUCCUAAGUGUAGCUCAGUGAGAACGGAAAUCUCACGUAGAACAAAAGGGUAAAAGCUACAUUGAUUUUGAUUUUCAGUAGGAAUACAAACCGCGAAAGCGUGGCCUAUCGAUCCUUUAACUUUACAAGUUUUAAGCUAGAGGUGUCAGAAAAGUUACCACAGGGAUAACUGGCUUGUGGCAGCCAAGAGUUCAUAUCGACGUUGCUUUUUGAUCCUUCGAUGUCGGCUCUUCCUAUCAUUGUGAAGCAGAAUUCACAACGUGUCGGAUUGUUCACCCGCUAAUAGGGAACGUGAGCUGGGUUUAGACCGUCGUGAGACAGGUUAGUUUUACCCUACUGAUGAAACGAUGUUGCGACAGUAAUUUAAGUUAGUACGAGAGGAACACUUAAAUCAGAUAAUUGGUAAAUACGGUUGUCUGAAAAGACAAUGCCGUGAAGCUACCAUCUGUUGGAUUAUGACUGAAGGCCUCUAAGUCAGAAUCCAUGCUGGAAAGCAAUGUCUAAGUGUGAUGAUAAACGAAAAAAAAUAAAAAUUAAGUUCGAAAGGUAGAGCGGGGAAGAGCGAAAAAGCUUGACCUUAACUGCUAAUCGUAAUUCCAAAUUAUCAUCUACGUAAAUCUUUUGUAGACGACUUAACAUGGAACGGGUAUUGUAAGCAUGAGAGUAGAAUUUCCUACGAUCUGCUGAGAUUCAGCCCGUCUCCUUAGAUUUAUCU
........................(((((......(...[..).......)))).).........((....))...((((......((.]...)).....))))...((((.........(((((..(((.....)))..))))....)........(((((..(((...(((..(((((((((....({((((......)))))[[(...).(((....}]]))).......)))))))..)).)))...)))..)))).)...)....(((((((........))))))).....(((((..[[[[[[)))))..)))..................................((....))............(..((((....))))..........).....................(.(((((((.....(...((((.(((((.....(((....(((((.((..((.(...((((((.(......)))))))..)..))...)))))))....)))....))))).))))..((((((((.(((((((.((((((......(((..((((..(((....))).))))...)))....)))))).))))))).....(((....))).))))))))...)...))))))).).[((((........))))((((((....(((.(((((((((..(((...(((........)))...)))...((....))........(((((...(((....)))....))))).(((((((....(((...)))....)).))).))....))))))))).)))..((.(...((((((.....((((((((((.(((....(((((((....)))))))....[)))...(((..((.((........)))).)))..).))))))))).(.((.......))...)..))))))......).))..((((((....(.(((....))).)(((((((((.....(((.(((((((((...(((....(((..(.(((..(((((((((...)))))))))))).)..)))..)).)...)))))))...(((.((((((..(......))))))))))....)))))..))))))).))..((((.((.((.....)).)).))))....(((......)))...((((((....((([[[...(.((((((......(..........(((.((((((((((.......(((((------------------------------------------------)))))...)))))))))))))..........]]].)....))))))))))....))))))(((((((((.........)))))))))....))))))(.((((((((((......((((.((((....))))))))...))))))))))..).....))))))((.....((.....((((((.......))))))((((.....((((..((..(((((((...((.....)).)))))).....[(((.((...(((..(((......)))......(...(((((......))))).).)))....))...(((((........)))))].((((.((((..((...(((....))).....<.((((((...((((.((((((((((((((((((...{{..))))))(...(((((...((((((.....(((.....))).....)).))))....)))))....)(((((((.------))))))))))).).))))))).))))(...)....)))))).........))..)))))))).))).))).....((......)).)))).((((.....))))..))))..((((.....(((((((.((..(....(.......(((((....(.{..).....)))))((.((((((...--------------------------------------------------------------------------------------------------------------------------)))))).))(...).......(((((((((.].((.........))...(((((((....((((....))))......))))))).}.(((..((..((((((.(...((.....(((......))).....)).)))))..)))).((((((.......))))))........((..........(((((.......)))))..)..)....)))....)).))))))).)..))).)))))))..))))))....)).{..(((((.....]}.)))))....(((((..(((.((......((((.((((((..(((((..(((((((..((((((((((.---------------------------------------------------------))))))))))...(((((.....((((..(((((....))))).........>..(((((.....)))))..))))..))))).....)))))))...)))))..(((......[)).)((((((..........]))))))([((...(((((((.(.((((((.......))))))...).((][.[[[))....)))))))...(((..((((....{..))))..))).(((....))).))]]].].....(((((.(.(((.]]]]]])))).)))))....)}....))))..)))))).......((.(.(.((((((...((.......))...))))))...)).).).........(((.((((((..(((((((((......))))))..))).(((.(.....).))).....)))))..)...))).......(((((((....))).))))....))..))).))))).....((((((((..((((.(((((((......(....).....)))))))(((((...((((....((((((((((}}..)))))..)))))...))))..))))).((((...((((.............))))...)))).))))....))))))))...(.((((((((....(.((................)))...(.((((...(((...((((......))))..)))...)))))..............)))))))))....((((((.(..(.......)..)....((((((((.(((....(((.((..((((......))))..)))))...)))....))))).)))...)))))).--